PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO69450
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family C3H
Protein Properties Length: 371aa    MW: 42291.2 Da    PI: 4.7274
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO69450genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.95.4e-0692115226
               -S---SGGGGTS--TTTTT-SS-SS CS
   zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
               k  lC ff + G+C  G +CkF+H+
  OMO69450  92 KSILCEFFKA-GQCAKGFKCKFSHD 115
               6679**7777.*************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    
MPPKQQGKSK ADLAKKQKVV EDKTFGLKNK NKSKNVQKYV QNLQQAVQPK PDPSKVAAKK  60
KKEEEKAREK ELNDLFKVAV TQPKVPVGVD PKSILCEFFK AGQCAKGFKC KFSHDLNVQR  120
KGEKIDIYSD KRDQDTMEDW DQEMLEKVVE SKKTEYNQNK PTEIVCKYFL EAVEKKQYGW  180
FWVCPNGGKD CHYRHALPPG YVLKSQMKAL LEEESEKIPV EEEIENERSK LSSSTPMTTE  240
LFMQWKKKKV DEREASLAAK QAERAKNDRM SGRELFLADA SLFVDDAEAY EEYQREEEPE  300
ATKDKVKDDS AEAGPSNATG SAADSEDIHL DDDDDDDDDD DDLDMDELNE LEASLSRTSI  360
RIQEPGIQAS S
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20280.11e-162C3H family protein