PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO69242

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

FAR1

Protein Properties

Length: 426aa MW: 48631.5 Da PI: 7.0458

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO69242	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	74	3.1e-23	63	147	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 Y++YAk++GF v++++s++sk +g++++ ++vC+++g+++e++ ++r+ +++Cka++++k+++dgkw ++++ ++HnH+l+p OMO69242 63 LYKKYAKKMGFGVTTRSSRRSKLSGQFIDVKYVCTRHGTKRETNAV-----NPRPCLKMECKAMFHIKRKHDGKWFLHNFIKDHNHDLFP 147 7************************************9997655.....9*********************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 426 aa Download sequence
MDIGIDSNDF IYGMNDNIVD CVENVDQEDE TGLFDSHGEN NENHDKDPQV GMEFDSPENA 60 YSLYKKYAKK MGFGVTTRSS RRSKLSGQFI DVKYVCTRHG TKRETNAVNP RPCLKMECKA 120 MFHIKRKHDG KWFLHNFIKD HNHDLFPAHS HFFPCHRSIN SAKRYDINTL HTVGVQTSKI 180 FAAMAKQHGG YENIGCLEKD IRNHLDKERC LALESGDANA MLEFFMHMQE KDPNFFYAMD 240 LDDEHRLKNV FWVDGKGVFN IPSRYILKRW TKDVRTKYKK GSGCEELQSK KQRRDALFDR 300 ATELIEEGSL SLESYNIAHQ ALQDALKRCS SVNHSLNLSN KDACGANESH DLGKENFDCN 360 ILHEKKILDP KDTQSKAGKS KDIGNNFPKD CSSNSGTQDV VATITNILCN NTSASDNTFD 420 MWLKGL

Sequence ? help Back to Top

Protein Sequence Length: 426 aa Download sequence

MDIGIDSNDF IYGMNDNIVD CVENVDQEDE TGLFDSHGEN NENHDKDPQV GMEFDSPENA  60
YSLYKKYAKK MGFGVTTRSS RRSKLSGQFI DVKYVCTRHG TKRETNAVNP RPCLKMECKA  120
MFHIKRKHDG KWFLHNFIKD HNHDLFPAHS HFFPCHRSIN SAKRYDINTL HTVGVQTSKI  180
FAAMAKQHGG YENIGCLEKD IRNHLDKERC LALESGDANA MLEFFMHMQE KDPNFFYAMD  240
LDDEHRLKNV FWVDGKGVFN IPSRYILKRW TKDVRTKYKK GSGCEELQSK KQRRDALFDR  300
ATELIEEGSL SLESYNIAHQ ALQDALKRCS SVNHSLNLSN KDACGANESH DLGKENFDCN  360
ILHEKKILDP KDTQSKAGKS KDIGNNFPKD CSSNSGTQDV VATITNILCN NTSASDNTFD  420
MWLKGL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	1e-60	FAR1 family protein

Link Out ? help Back to Top
Ensembl	OMO69242