PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO68557

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

FAR1

Protein Properties

Length: 716aa MW: 83131.2 Da PI: 6.7666

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO68557	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	83.4	3.6e-26	29	114	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +Y++YAk vGF + k +s++s+ ++e+++++f+C ++g++++++++ ++r++ ++gCka+++vk+++dgkw+v++++++HnHel p OMO68557 29 YYKDYAKAVGFGTAKLSSRRSRVSKEFIDAKFTCIRYGNKQQSDDA----INPRPSPKIGCKASMHVKRRQDGKWYVYSFVKDHNHELLP 114 9*************************************999877....9**********************************975 PP

Sequence ? help Back to Top
Protein Sequence Length: 716 aa Download sequence
MESSISTSEA ILEPHQDVEF ESHEAAYSYY KDYAKAVGFG TAKLSSRRSR VSKEFIDAKF 60 TCIRYGNKQQ SDDAINPRPS PKIGCKASMH VKRRQDGKWY VYSFVKDHNH ELLPDQAHFF 120 RSHRNIDPLK NDVGRRRKNL AAVSKLFSAY QNVDFLEGYM RNQHDKGRSL ALEEGDAQVL 180 LELFMHMQEE NPKFYYAVDL NEEHRLRNVF WVDAKGMEDF SNFGDVVSFD TTYFTNKYKI 240 PLVLFIGVNH HIQPTLLGCA LIADETVYTF LWLMQTWFIA MGERAPQVLL TDQNNALKAA 300 VAAVFPNTCH CFCLWHVLEK LPRHLEYLSL WQDSLMQKFD KCIYRSWTEE QFEKRWWKMV 360 DKFHLREMQW IQSLYEDRKQ WIPAFMKDIS FAGLSTALRS DSLSSSFDKY VHAETSLRDF 420 IEQYKAILED RYEEEAKADF NAWHETPELK SPSPFEKQMS HVYTHEIFKK FQVEVLGAAA 480 CHLKKENEDQ VSTIYSVKDF EDNQNYMVEW NESKSDIYCS CHSFEYKGYL CRHAIVVLQM 540 SGVFSIPSKY ILQRWTNAAL SRRPISNKLD EVQSKVRRYT DLCRRAIILS EEGSLSQESY 600 NLALSSIKEA LKQCASVNNS IENDVRPNTL VTHAISGVEG HDQCVNAPED KAPDPRMTNT 660 TKTSQSVEAA LERQLNENNA TRRGKVSGTL LICMILDDNI LIYKGIGKEN HQYLLL

Sequence ? help Back to Top

Protein Sequence Length: 716 aa Download sequence

MESSISTSEA ILEPHQDVEF ESHEAAYSYY KDYAKAVGFG TAKLSSRRSR VSKEFIDAKF  60
TCIRYGNKQQ SDDAINPRPS PKIGCKASMH VKRRQDGKWY VYSFVKDHNH ELLPDQAHFF  120
RSHRNIDPLK NDVGRRRKNL AAVSKLFSAY QNVDFLEGYM RNQHDKGRSL ALEEGDAQVL  180
LELFMHMQEE NPKFYYAVDL NEEHRLRNVF WVDAKGMEDF SNFGDVVSFD TTYFTNKYKI  240
PLVLFIGVNH HIQPTLLGCA LIADETVYTF LWLMQTWFIA MGERAPQVLL TDQNNALKAA  300
VAAVFPNTCH CFCLWHVLEK LPRHLEYLSL WQDSLMQKFD KCIYRSWTEE QFEKRWWKMV  360
DKFHLREMQW IQSLYEDRKQ WIPAFMKDIS FAGLSTALRS DSLSSSFDKY VHAETSLRDF  420
IEQYKAILED RYEEEAKADF NAWHETPELK SPSPFEKQMS HVYTHEIFKK FQVEVLGAAA  480
CHLKKENEDQ VSTIYSVKDF EDNQNYMVEW NESKSDIYCS CHSFEYKGYL CRHAIVVLQM  540
SGVFSIPSKY ILQRWTNAAL SRRPISNKLD EVQSKVRRYT DLCRRAIILS EEGSLSQESY  600
NLALSSIKEA LKQCASVNNS IENDVRPNTL VTHAISGVEG HDQCVNAPED KAPDPRMTNT  660
TKTSQSVEAA LERQLNENNA TRRGKVSGTL LICMILDDNI LIYKGIGKEN HQYLLL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76320.1	0.0	FAR1 family protein

Link Out ? help Back to Top
Ensembl	OMO68557