PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO68537

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

AP2

Protein Properties

Length: 556aa MW: 61078.9 Da PI: 6.6458

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO68537	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	35.6	2.4e-11	171	227	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + ++ k + g ++ +e+Aa+a++ a++k++g OMO68537 171 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEEKAARAYDLAALKYWG 227 57*****************5444.2455536655.779999************98 PP
2	AP2	47.1	6.1e-15	272	321	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t+eeAa+a++ a+ k++g OMO68537 272 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTEEEAAEAYDIAAIKFRG 321 9*************988532...5**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 556 aa Download sequence
MGSMNSNNWL SFPLSPTNAS LPSHLHSSQA HQFNLGLVND TMENPFQAQE WNLINTHDTS 60 EVPKVADFLG VSKSESPSLD LVGFNDIHHH QPNDSDYSFQ NNSTIVPVQT AIVPNNNNSY 120 EFQENANNLQ ALTLSMGSGK GSTCETSGEN STNTVEAPPR RTLDTFGQRT SIYRGVTRHR 180 WTGRYEAHLW DNSCRREGQS RKGRQGGYDK EEKAARAYDL AALKYWGTST TTNFPISNYE 240 KELEEMKHMT RQEFVAAIRR KSSGFSRGAS MYRGVTRHHQ HGRWQARIGR VAGNKDLYLG 300 TFSTEEEAAE AYDIAAIKFR GLNAVTNFDM SRYDVKAILE SNTLPIGGGA AKRLKEAQAL 360 ESSRKREEMI ALGSTFQYGN SSSTRLQPYP LIQAPFEQPP QPLLTLHNED ISQYAQDTSS 420 FHQSYIQTQL QLHQQSGSNF LHQSAGQNSG FYNGYMQGNP ALFHGLMNNM GVSSSSVVDN 480 NGSSSGSYST GGYLGNGIGM ASNSTAGNAV GSTEELSLVK VDYDMPAGGG GGGYGGWSRD 540 SVHQGSNPGV FTMWND

Sequence ? help Back to Top

Protein Sequence Length: 556 aa Download sequence

MGSMNSNNWL SFPLSPTNAS LPSHLHSSQA HQFNLGLVND TMENPFQAQE WNLINTHDTS  60
EVPKVADFLG VSKSESPSLD LVGFNDIHHH QPNDSDYSFQ NNSTIVPVQT AIVPNNNNSY  120
EFQENANNLQ ALTLSMGSGK GSTCETSGEN STNTVEAPPR RTLDTFGQRT SIYRGVTRHR  180
WTGRYEAHLW DNSCRREGQS RKGRQGGYDK EEKAARAYDL AALKYWGTST TTNFPISNYE  240
KELEEMKHMT RQEFVAAIRR KSSGFSRGAS MYRGVTRHHQ HGRWQARIGR VAGNKDLYLG  300
TFSTEEEAAE AYDIAAIKFR GLNAVTNFDM SRYDVKAILE SNTLPIGGGA AKRLKEAQAL  360
ESSRKREEMI ALGSTFQYGN SSSTRLQPYP LIQAPFEQPP QPLLTLHNED ISQYAQDTSS  420
FHQSYIQTQL QLHQQSGSNF LHQSAGQNSG FYNGYMQGNP ALFHGLMNNM GVSSSSVVDN  480
NGSSSGSYST GGYLGNGIGM ASNSTAGNAV GSTEELSLVK VDYDMPAGGG GGGYGGWSRD  540
SVHQGSNPGV FTMWND

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51190.1	0.0	AP2 family protein

Link Out ? help Back to Top
Ensembl	OMO68537