PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO68462

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

MYB

Protein Properties

Length: 492aa MW: 53256.6 Da PI: 6.4519

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO68462	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.3	1.5e-17	57	102	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd l ++v+++G ++W++Iar ++ gR++k+c++rw + OMO68462 57 KGPWSPEEDAVLSRLVAKFGARNWSLIARGIP-GRSGKSCRLRWCNQ 102 79****************************.*********985 PP
2	Myb_DNA-binding	57.6	2.9e-18	109	153	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r+++T eEd ++++a++ +G++ W++Ia+ ++ gRt++ +k++w++ OMO68462 109 RKPFTDEEDSIIIQAHAIHGNK-WASIAKLLP-GRTDNAIKNHWNST 153 789*****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 492 aa Download sequence
MKEGEERESN RLDSPAAGGS GSGSGGDELE SILAESELAG GGVGGGGASG GSNSRVKGPW 60 SPEEDAVLSR LVAKFGARNW SLIARGIPGR SGKSCRLRWC NQLDPCLKRK PFTDEEDSII 120 IQAHAIHGNK WASIAKLLPG RTDNAIKNHW NSTLRRRCIE LGRCRQGPGD MMDDGSLERT 180 KASSEETLSV EDINSFKHLE GRDVVMDDRP NLQEDKRPTK DDQSAVEAKD QSTLYRPVAR 240 VSAFSVYNPP SSSGADSGMS STVLRKGPLA HSSKPEWGVG KILEDLRSEP IIPLRCGFGC 300 CSTHCAGHSQ SSLLGPEFID YEEPPAFSSH ELISIATDIN NIAWIKSGLE NSCGGMPGNA 360 SAHRMSQGGT SSMQIGVLEQ HVQNDRLHFD DGRIKLTGMT TEVIPAQMPK QTFTIQSEEN 420 GHVRISSNAA PKRMSQGASS SMQMGISEQY LKSDHLRFDD GRSKLTGMMT EVLPTQMPKQ 480 TFTMRSEVEG LS

Sequence ? help Back to Top

Protein Sequence Length: 492 aa Download sequence

MKEGEERESN RLDSPAAGGS GSGSGGDELE SILAESELAG GGVGGGGASG GSNSRVKGPW  60
SPEEDAVLSR LVAKFGARNW SLIARGIPGR SGKSCRLRWC NQLDPCLKRK PFTDEEDSII  120
IQAHAIHGNK WASIAKLLPG RTDNAIKNHW NSTLRRRCIE LGRCRQGPGD MMDDGSLERT  180
KASSEETLSV EDINSFKHLE GRDVVMDDRP NLQEDKRPTK DDQSAVEAKD QSTLYRPVAR  240
VSAFSVYNPP SSSGADSGMS STVLRKGPLA HSSKPEWGVG KILEDLRSEP IIPLRCGFGC  300
CSTHCAGHSQ SSLLGPEFID YEEPPAFSSH ELISIATDIN NIAWIKSGLE NSCGGMPGNA  360
SAHRMSQGGT SSMQIGVLEQ HVQNDRLHFD DGRIKLTGMT TEVIPAQMPK QTFTIQSEEN  420
GHVRISSNAA PKRMSQGASS SMQMGISEQY LKSDHLRFDD GRSKLTGMMT EVLPTQMPKQ  480
TFTMRSEVEG LS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55730.1	1e-108	MYB family protein

Link Out ? help Back to Top
Ensembl	OMO68462