PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO68385
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family C3H
Protein Properties Length: 440aa    MW: 47568.4 Da    PI: 6.558
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO68385genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.71.8e-07102123426
               ---SGGGGTS--TTTTT-SS-SS CS
   zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
               + C ++++ G+C +Gd CkF H+
  OMO68385 102 KVCTDWMQ-GQCTHGDGCKFLHS 123
               68******.*************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    
MCFHGGKRRV FNRLGGDSTA PTDSSKNQKV CYHWRAGKCN RYPCRFLHGE LPDPSTAAAA  60
TANGSGSLKR FSDDSGFSGP VAKRGPNYKN KNTWVRSKTD QKVCTDWMQG QCTHGDGCKF  120
LHSWSLGEGF ALLNHLDGHQ EFVTGICWPG SDTVYSGSRD GAVRAWNSSS GECVGVANVG  180
GEVGCMFSEG PWVFVGIPDA VKAWNTQTNS DLSLSGPVGQ VYALATSDDL LLAGSQDGTI  240
LAWKFNAFIT NNNFEAVPSL KGHTRAVVSL VVSLAAGAQN RVYSGSVDHS IKVWSLDTLQ  300
CLQTLTEHTD VVMSLLCWEQ FLLSCSLDQT IKVWIGTNDG GVEVTHTRSE EHGLLVLRGM  360
HDMESKPVLL CVCNDNSVRL YDLPSFSERG KIFAKQDIRA IAVGPDRSGL FFTGDGTGFK  420
VCKWAEAEAE AEAEAIATSS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.11e-174C3H family protein