PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO68242
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family ERF
Protein Properties Length: 340aa    MW: 37920.7 Da    PI: 4.712
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO68242genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.92.9e-19122172155
       AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
               ++++GVr+++ +g+W+AeIrdp     r  r +lg+++taeeAa  +++a+ +l+g
  OMO68242 122 KKFRGVRQRP-WGKWAAEIRDPL----RrVRLWLGTYDTAEEAAMVYDNAAIQLRG 172
               59********.**********72....45*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    
MDHCPVPSIK YTEHLNQTKL LSPLFENHPE TKPPRVVRIS VTDADATDSS SDEEEEQTTR  60
FRSRNRVRKF VNEITIESSC PTENDAVSRS KSSSLSKGSR KRPAAAVAEV KVKTPAKVPA  120
SKKFRGVRQR PWGKWAAEIR DPLRRVRLWL GTYDTAEEAA MVYDNAAIQL RGPDALTNFT  180
TPLQKSLEDK SSQKPLSSSD YNFDEESHNT NLSSPTSVLR CPSLSAEEVG SQSATESREI  240
RSEPRDVIYE SCCISGENFS DFSEYSSFLP SDIFSSVPDL FEDNTSLHED LFKDDFCNGF  300
LTSGGDFDFG FGGFSSWQHA DDHFQDIGDI FGSDPLVAIS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.11e-59ERF family protein