PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OMO67872 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 257aa MW: 28221.6 Da PI: 6.728 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 126.4 | 1.4e-39 | 44 | 145 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +C aCk+lrrkC ++C++ap+f ++q +++fa+vhk+FGasnv+kll ++p ++r+da+ ++ yeA+ar++dPvyG+v++il+lqqq+++l+aela+++++ OMO67872 44 PCGACKFLRRKCITGCIFAPHFGSDQgAARFAAVHKVFGASNVSKLLLHIPVNRRQDAVVTISYEAQARLSDPVYGCVSTILSLQQQVASLQAELAMVQNQ 144 7***********************9989**********************************************************************998 PP DUF260 101 l 101 l OMO67872 145 L 145 6 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 257 aa Download sequence |
MAEPHCPGAM SETRRRSTAT RATMPAVEAD EPLVVANTPV PAAPCGACKF LRRKCITGCI 60 FAPHFGSDQG AARFAAVHKV FGASNVSKLL LHIPVNRRQD AVVTISYEAQ ARLSDPVYGC 120 VSTILSLQQQ VASLQAELAM VQNQLINSRF AMANALQTSQ QQQQQQAQQQ QQQHQQQHQQ 180 QIALLQPAYS NTSSASNNNL INISNFTSNF DLVAETTAPS SQSMDHLHLS RPCHDDEDDE 240 EESRIPAIFA NDIIHHR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G03760.1 | 3e-60 | LBD family protein |
Link Out ? help Back to Top | |
---|---|
Ensembl | OMO67872 |