PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO67801
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family GRAS
Protein Properties Length: 774aa    MW: 86433.1 Da    PI: 5.7899
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO67801genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS381.69.3e-1174017711373
      GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
               l++lL+ cA+a+ss+d   a++lL+++++++ p gd  qRla+ f++AL+arla++++++y +l++++ s    ++ l+a++++  ++P++k++ + aN+ 
  OMO67801 401 LRTLLILCAQAISSDDRGTAKELLKQIRQHSLPFGDGSQRLAHKFANALEARLAGTGTQIYTSLAAKRPS---AADMLKAYQVYISACPFMKVAIIFANNN 498
               5789************************************************************999999...9*************************** PP

      GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgE 200
               Il+ +e++++vHiiDf+i +G+QWpaL++ La+Rp+gpp+lRiTg++ p+ g   +e++ etg rLa+++e+ +vpfefn+ +a+++e++++e+L+++p+E
  OMO67801 499 ILKVAEKATTVHIIDFGIFYGFQWPALIHRLATRPGGPPKLRITGIEFPQRGfrPSEKVLETGYRLARYCERYNVPFEFNA-IAQKWETIRFEDLKINPNE 598
               ***************************************************9**999************************.7****************** PP

      GRAS 201 alaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvace 301
               ++aVn+ ++l++llde+v l+s+rd+vL+l+++++P+++v +  + ++n++ F++rf eal ++salfd+ e+ +pre+  r ++E+++ grei+n+vace
  OMO67801 599 VVAVNSLFRLKNLLDETVVLNSPRDTVLNLIRKINPDIFVQSVVNGSYNAPFFVTRFREALFHFSALFDMCETVVPREDYMRGMLEKQFYGREIMNIVACE 699
               ***************************************************************************************************** PP

      GRAS 302 gaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
               g+er+er e++++W+ r ++aGF+++pl+++ +k +++ +++ +   ++v+ +  ++++gWk+r +++ SaW
  OMO67801 700 GTERVERPESYKQWQVRNMRAGFTQLPLDSELMKRVRSKVKERYHSDFMVDVDGRWMLQGWKGRIIYASSAW 771
               ******************************************99777************************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 774 aa     Download sequence    
MGSQFNGFPD SVNGFKFDDG FILPNSNGFP RLEISNGVRP SDQYLDFSSI GAPFLPSLGL  60
DNSSTSTSFL SMDGEGEGDS FSPSDDSDFS DTVLKYISQV LLEEDMEERP CMFHDSLALQ  120
AAEKSLYEVL GESYPPPNQA PLSSDQSVES PDSSSFGTFS DHSTTYSCSS SCTSNSIDSL  180
WNADTGENNT KPSLLRQSIP ENFVFQSIGN SGLQSSTSFQ NGSVANNRNG LVGSSVTVSE  240
LAIPNYFSET ELALHFKRGV EEASKFLPKG NQLTVNFESN GFTSELKQDA PKTEVKVERD  300
EDCSPPRLTG KKNHVREDGD LEEERNNKQS AVFGDESELS DMFDKVLICA GRRGQPPASN  360
AEKTLQNGPS KILQQNEQKN GSSSAKARGK KQGKKKEVVD LRTLLILCAQ AISSDDRGTA  420
KELLKQIRQH SLPFGDGSQR LAHKFANALE ARLAGTGTQI YTSLAAKRPS AADMLKAYQV  480
YISACPFMKV AIIFANNNIL KVAEKATTVH IIDFGIFYGF QWPALIHRLA TRPGGPPKLR  540
ITGIEFPQRG FRPSEKVLET GYRLARYCER YNVPFEFNAI AQKWETIRFE DLKINPNEVV  600
AVNSLFRLKN LLDETVVLNS PRDTVLNLIR KINPDIFVQS VVNGSYNAPF FVTRFREALF  660
HFSALFDMCE TVVPREDYMR GMLEKQFYGR EIMNIVACEG TERVERPESY KQWQVRNMRA  720
GFTQLPLDSE LMKRVRSKVK ERYHSDFMVD VDGRWMLQGW KGRIIYASSA WIPA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0GRAS family protein