PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO67800
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family GRAS
Protein Properties Length: 684aa    MW: 77516.8 Da    PI: 6.3975
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO67800genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS357.71.7e-1092836491365
      GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
               l++lL+ cA+avs++d + a +lL++++e++sp gd +qRla++f+++L+arl +s++ + +  ++ ++++++ ++ l+a++ +  ++P+ k+  + aN++
  OMO67800 283 LRTLLILCAQAVSADDRRTAGELLKQIKEHSSPVGDGTQRLAHFFANGLEARLDGSGTVIQNFYASLASKRTTAADMLKAYQGYLCACPFKKIPIFFANKM 383
               5789***************************************************999999999999999999**************************** PP

      GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgE 200
               I + +e+++ +Hi+Df+i +G+QWp L+q L++Rp+gpp+lRiTg++ p+ g   +e++ etg+rLak++++++vpfe+n+++++++e++++e+++++++E
  OMO67800 384 IWKMAENASVLHIVDFGILYGFQWPILIQHLSKRPGGPPKLRITGIEIPQRGfrPTERIDETGRRLAKYCQRFNVPFEYNAIASQNWETIQIEDIKINSNE 484
               **************************************************99******************************999**************** PP

      GRAS 201 alaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvace 301
               +laVn+ ++ ++llde+++++ +rd+vLkl+++++P+++v++  + + ns+ F++rf eal ++salfd++e++l re+ +r + E e+ gre++nv+ace
  OMO67800 485 MLAVNCLFRFKNLLDETAEVNCPRDAVLKLIRKMNPDIFVHSIINGSFNSPFFVTRFREALFHHSALFDMFETTLTREDLTRLMFESEFYGREAMNVIACE 585
               ***************************************************************************************************** PP

      GRAS 302 gaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdr 365
               g++r+er et+++W+ r  +aGFkp+pl+++ +k+ k  l+  + + + ++e+++++++gWk +
  OMO67800 586 GSARVERPETYKQWQTRTIRAGFKPLPLNQELMKTLKNKLKDWYHKDFVIDEDNHWMLQGWKAQ 649
               ********************************************888**************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 684 aa     Download sequence    
MVKPSPLFLR FWVLGIVMDQ KFTEFSDYIN GFKVEDDTLV LNSGQYPNFT NGFGFNVPSP  60
DLGFMNMNVP VEPPDSGPPG VSLPPVTYQS QSTSQQPSSH FSVGSTNSLT NLGNGLMESS  120
ISQLLAQNIF SDKDSVLQFQ KGFEEASKFL PSGNKLVIDI ESSTFPMGQK AKGPDVVVKV  180
EKDEREKSPD GSRGRKNHER DDEGEVEESR SNKQSAVYIE ESDLSEMFDR VLLCNEGNGM  240
CGTNGPTQQE EIKTLQQKEQ SNGSSGGKSR SKKQGKKKET VDLRTLLILC AQAVSADDRR  300
TAGELLKQIK EHSSPVGDGT QRLAHFFANG LEARLDGSGT VIQNFYASLA SKRTTAADML  360
KAYQGYLCAC PFKKIPIFFA NKMIWKMAEN ASVLHIVDFG ILYGFQWPIL IQHLSKRPGG  420
PPKLRITGIE IPQRGFRPTE RIDETGRRLA KYCQRFNVPF EYNAIASQNW ETIQIEDIKI  480
NSNEMLAVNC LFRFKNLLDE TAEVNCPRDA VLKLIRKMNP DIFVHSIING SFNSPFFVTR  540
FREALFHHSA LFDMFETTLT REDLTRLMFE SEFYGREAMN VIACEGSARV ERPETYKQWQ  600
TRTIRAGFKP LPLNQELMKT LKNKLKDWYH KDFVIDEDNH WMLQGWKAQY MSEGADTLLL  660
FDYSDYDGHA RLLPEEESYG VRRF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0GRAS family protein