PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO67799
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family GRAS
Protein Properties Length: 574aa    MW: 65396.1 Da    PI: 6.4009
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO67799genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS348.11.5e-1061855611374
      GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
               l++lL++cAeav s+d+++a+ +L++++ +asp g++ +R a+yf +AL+arla+++se y+al +++ +    + ++ a kl+  ++P++k+s++ + ++
  OMO67799 185 LRTLLIQCAEAVGSNDFKNAKDFLTQIRLHASPFGNASERKAHYFGRALEARLAGTGSEEYAALVSNRIP----AATIEACKLLISACPFMKVSNFFTTEM 281
               6789*********************************************************999988887....78999********************** PP

      GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg......skeeleetgerLakfAeelgvpfefnvlvakrledleleeLr 195
               I++ +++++++Hii f++ +GlQW +L+q L++ p ++pp lR+Tg++ p++        + ++eetg+ La+ ++++++pfe+n++  k +e++++e+L+
  OMO67799 282 IMKTAKKATKIHIIHFGVPYGLQWSSLIQRLSEMPgSNPPLLRVTGIDLPDQPglmeseARISVEETGHPLANCCKQFNIPFEYNAIKQKYWENIQMEDLK 382
               ***********************************78899********9988789998788899**********************9999*********** PP

      GRAS 196 vkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivn 296
               ++++E+++Vn+ ++l +++de  +l+s+rd+vL+l+++++P+++++   +  +n++ F+ rf eal+yys++fd+le+ +p+e +er+++E+ + ++ei n
  OMO67799 383 IDRNEVIVVNCLYRLRHIVDEMEDLSSPRDTVLNLIRKINPNIFIHGIVNGTYNAPFFVSRFREALYYYSSMFDMLEEIAPSEGKERMVMEENIHAKEILN 483
               ***************************************************************************************************** PP

      GRAS 297 vvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
               vvaceg+er+er et+++W+ r  +aG++++pl++++ ++ak+ ++ ++ + + v+ +++++++gWk+++L+++S+W+
  OMO67799 484 VVACEGSERVERPETYKQWQVRNLRAGLRQLPLKQEMLMSAKAHVKLHYHRDFLVDGDKNWMLQGWKGKTLFALSFWK 561
               *************************************************999*************************8 PP

Sequence ? help Back to Top
Protein Sequence    Length: 574 aa     Download sequence    
MNPYSYPTVG DPAVESDLSN AVYITPFFTE DAVQKTFMFD DSTFQTAHID ILADKYPLST  60
VPDPLPVCSN LHWSSCMNTA VDNSVQSSFI CDLAKGCGEL SHMLSPQVII QRAFQDYPID  120
VPVIFPFEQP DMFMNDVYAA LLTSDISWRN EADSRIMNDS KEPKENEAGT RELRRRSVKR  180
KLVDLRTLLI QCAEAVGSND FKNAKDFLTQ IRLHASPFGN ASERKAHYFG RALEARLAGT  240
GSEEYAALVS NRIPAATIEA CKLLISACPF MKVSNFFTTE MIMKTAKKAT KIHIIHFGVP  300
YGLQWSSLIQ RLSEMPGSNP PLLRVTGIDL PDQPGLMESE ARISVEETGH PLANCCKQFN  360
IPFEYNAIKQ KYWENIQMED LKIDRNEVIV VNCLYRLRHI VDEMEDLSSP RDTVLNLIRK  420
INPNIFIHGI VNGTYNAPFF VSRFREALYY YSSMFDMLEE IAPSEGKERM VMEENIHAKE  480
ILNVVACEGS ERVERPETYK QWQVRNLRAG LRQLPLKQEM LMSAKAHVKL HYHRDFLVDG  540
DKNWMLQGWK GKTLFALSFW KASKLGAIIK QVEL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1174182RRRSVKRKL
2175183RRRSVKRKL
3175181RRSVKRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.11e-136GRAS family protein