PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMO67799 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
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Family | GRAS | ||||||||
Protein Properties | Length: 574aa MW: 65396.1 Da PI: 6.4009 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 348.1 | 1.5e-106 | 185 | 561 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101 l++lL++cAeav s+d+++a+ +L++++ +asp g++ +R a+yf +AL+arla+++se y+al +++ + + ++ a kl+ ++P++k+s++ + ++ OMO67799 185 LRTLLIQCAEAVGSNDFKNAKDFLTQIRLHASPFGNASERKAHYFGRALEARLAGTGSEEYAALVSNRIP----AATIEACKLLISACPFMKVSNFFTTEM 281 6789*********************************************************999988887....78999********************** PP GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg......skeeleetgerLakfAeelgvpfefnvlvakrledleleeLr 195 I++ +++++++Hii f++ +GlQW +L+q L++ p ++pp lR+Tg++ p++ + ++eetg+ La+ ++++++pfe+n++ k +e++++e+L+ OMO67799 282 IMKTAKKATKIHIIHFGVPYGLQWSSLIQRLSEMPgSNPPLLRVTGIDLPDQPglmeseARISVEETGHPLANCCKQFNIPFEYNAIKQKYWENIQMEDLK 382 ***********************************78899********9988789998788899**********************9999*********** PP GRAS 196 vkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivn 296 ++++E+++Vn+ ++l +++de +l+s+rd+vL+l+++++P+++++ + +n++ F+ rf eal+yys++fd+le+ +p+e +er+++E+ + ++ei n OMO67799 383 IDRNEVIVVNCLYRLRHIVDEMEDLSSPRDTVLNLIRKINPNIFIHGIVNGTYNAPFFVSRFREALYYYSSMFDMLEEIAPSEGKERMVMEENIHAKEILN 483 ***************************************************************************************************** PP GRAS 297 vvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 vvaceg+er+er et+++W+ r +aG++++pl++++ ++ak+ ++ ++ + + v+ +++++++gWk+++L+++S+W+ OMO67799 484 VVACEGSERVERPETYKQWQVRNLRAGLRQLPLKQEMLMSAKAHVKLHYHRDFLVDGDKNWMLQGWKGKTLFALSFWK 561 *************************************************999*************************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 574 aa Download sequence |
MNPYSYPTVG DPAVESDLSN AVYITPFFTE DAVQKTFMFD DSTFQTAHID ILADKYPLST 60 VPDPLPVCSN LHWSSCMNTA VDNSVQSSFI CDLAKGCGEL SHMLSPQVII QRAFQDYPID 120 VPVIFPFEQP DMFMNDVYAA LLTSDISWRN EADSRIMNDS KEPKENEAGT RELRRRSVKR 180 KLVDLRTLLI QCAEAVGSND FKNAKDFLTQ IRLHASPFGN ASERKAHYFG RALEARLAGT 240 GSEEYAALVS NRIPAATIEA CKLLISACPF MKVSNFFTTE MIMKTAKKAT KIHIIHFGVP 300 YGLQWSSLIQ RLSEMPGSNP PLLRVTGIDL PDQPGLMESE ARISVEETGH PLANCCKQFN 360 IPFEYNAIKQ KYWENIQMED LKIDRNEVIV VNCLYRLRHI VDEMEDLSSP RDTVLNLIRK 420 INPNIFIHGI VNGTYNAPFF VSRFREALYY YSSMFDMLEE IAPSEGKERM VMEENIHAKE 480 ILNVVACEGS ERVERPETYK QWQVRNLRAG LRQLPLKQEM LMSAKAHVKL HYHRDFLVDG 540 DKNWMLQGWK GKTLFALSFW KASKLGAIIK QVEL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 174 | 182 | RRRSVKRKL |
2 | 175 | 183 | RRRSVKRKL |
3 | 175 | 181 | RRSVKRK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 1e-136 | GRAS family protein |
Link Out ? help Back to Top | |
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Ensembl | OMO67799 |