PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO67584

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

Trihelix

Protein Properties

Length: 382aa MW: 42143.2 Da PI: 9.7019

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO67584	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	68	1.9e-21	56	147	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqlea 87 +W+++e+ aLi+a+r+++ +lrrg+lk+ +W+ev++ + ++++qC++k+e+l+kry+ + +++++ s+ +s++++f++++a OMO67584 56 CWSHDETVALIDAYRDKWYALRRGNLKASHWQEVADSVgrrcPMATPPKTAVQCRHKMEKLRKRYRTEIQRARSMpVSRFVSSWVHFKRMDA 147 7***********************************75443334489*********************97799*********85 PP

Sequence ? help Back to Top
Protein Sequence Length: 382 aa Download sequence
MSNPSSPSPE QDPPLNTSPP SPSEVQLALP APPTATSTPP ATATVVPNPR RLPPPCWSHD 60 ETVALIDAYR DKWYALRRGN LKASHWQEVA DSVGRRCPMA TPPKTAVQCR HKMEKLRKRY 120 RTEIQRARSM PVSRFVSSWV HFKRMDAMEK GPNVKPDYNS DSPDEDSDDD DEDDQDQDYY 180 GDAYKNGSVN TRSVQKLYRN GIGNSGGSVG GSGSGGGSSG GFRIRIPTGV SIAQPGPRFY 240 AKMDQKYGAN PNSNPNVNVN PHPIKTSYGG SGSASAAYGT RVLRGFEETP GKTPGSSGKR 300 ERERDRDAVA EMVSAIKVLG DGFVRMEQMK MEMAREIETM RMEMEMKRTE MILDSQQRIV 360 EAFAKAVSDR KKKAKRMPSP ES

Sequence ? help Back to Top

Protein Sequence Length: 382 aa Download sequence

MSNPSSPSPE QDPPLNTSPP SPSEVQLALP APPTATSTPP ATATVVPNPR RLPPPCWSHD  60
ETVALIDAYR DKWYALRRGN LKASHWQEVA DSVGRRCPMA TPPKTAVQCR HKMEKLRKRY  120
RTEIQRARSM PVSRFVSSWV HFKRMDAMEK GPNVKPDYNS DSPDEDSDDD DEDDQDQDYY  180
GDAYKNGSVN TRSVQKLYRN GIGNSGGSVG GSGSGGGSSG GFRIRIPTGV SIAQPGPRFY  240
AKMDQKYGAN PNSNPNVNVN PHPIKTSYGG SGSASAAYGT RVLRGFEETP GKTPGSSGKR  300
ERERDRDAVA EMVSAIKVLG DGFVRMEQMK MEMAREIETM RMEMEMKRTE MILDSQQRIV  360
EAFAKAVSDR KKKAKRMPSP ES

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	2e-78	Trihelix family protein

Link Out ? help Back to Top
Ensembl	OMO67584