PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMO67453 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 844aa MW: 92209 Da PI: 5.8872 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.5 | 2.3e-18 | 25 | 83 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le++++++++ps +r++L +++ +++ +q+kvWFqNrR +ek+ OMO67453 25 KYVRYTAEQVEALERVYAECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 83 56789****************************************************97 PP | |||||||
2 | START | 157.7 | 9.5e-50 | 165 | 372 | 2 | 204 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXXTT CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvaelqa 100 +aee+++e+++ka+ ++ Wv+++ +++g++++ +f+ s+++sg a+ra+g+v +++ +e+l+d++ W + ++ e+ g g+++l +++++a OMO67453 165 IAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQSCSGVAARACGLVSLEPT-KIAEILKDRPSWFRECRNLEVFTMFPAGngGTIELVYTQTYA 264 7899******************************************************.7777777777*******9999999998888************ PP XX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHH CS START 101 lsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwv 197 +++l+p Rdf+++Ry+ +l+ g++v++++S++ p+ +++vRae+lpSg+li+p+++g+s +++v+h +l++++++++lr+l++s+ + ++k++ OMO67453 265 PTTLAPaRDFWTLRYTTTLENGSLVVCERSLSGSGAGPSaaaAAQFVRAEMLPSGYLIRPCEGGGSIIHIVDHLNLEAWSVPEVLRPLYESSKVIAQKMTI 365 ********************************99999988999********************************************************** PP HHTXXXX CS START 198 atlqrqc 204 a+l++ + OMO67453 366 AALRYIR 372 **99865 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 844 aa Download sequence |
MAMAVAHHRE SSSGSSINKH LDPGKYVRYT AEQVEALERV YAECPKPSSL RRQQLIRECP 60 ILSNIEPKQI KVWFQNRRCR EKQRKESSRL QTVNRKLSAM NKLLMEENDR LQKQVSQLVC 120 ENGYMRQQLH TVNASAATDA SCDSVVTTPQ QSMRDASNPA GLLSIAEETL AEFLSKATGT 180 AVDWVQMPGM KPGPDSVGIF AISQSCSGVA ARACGLVSLE PTKIAEILKD RPSWFRECRN 240 LEVFTMFPAG NGGTIELVYT QTYAPTTLAP ARDFWTLRYT TTLENGSLVV CERSLSGSGA 300 GPSAAAAAQF VRAEMLPSGY LIRPCEGGGS IIHIVDHLNL EAWSVPEVLR PLYESSKVIA 360 QKMTIAALRY IRQIAQETSG EVVYGLGRQP AVLRTFSQRL SRGFNDAING FNDDGWSIMN 420 CDGAEDVIIA INSSKSLSST SNPANALSFL GGVLCAKASM LLQNVPPAVL VRFLREHRSE 480 WADFNVDAYS AASLKAGTYA YPGMRPTRFT GSQIIMPLGH TIEHEELLEV IRLEGHSLVQ 540 EDAFLSRDIH LLQICSGIDE NAVGACSELV FAPIDEMFPD DAPLLPSGFR IIPLDSKPSD 600 TQDSVTTNRT LDLTSSLEVG PATNNAAGDA PSQNTRSVLT IAFQFPFDSN LQDNVATMAR 660 QYVRSVISSV QRVAMAISPS GLSPTVGTKL SPGSPEALTL AHWICQSYSY HLGAELLRSE 720 SLGGDSVLKN LWQHQDAILC CSLKSLPVFI FANQAGLDML ETTLVALQDI TLDKIFDESG 780 RKALCSDFAK LMQQGFAYLP AGICMSTMGR HVSYEQAVAW KVLAADDEST VHCLAFSFVN 840 WSFV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60690.1 | 0.0 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Ensembl | OMO67453 |