PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO67453
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family HD-ZIP
Protein Properties Length: 844aa    MW: 92209 Da    PI: 5.8872
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO67453genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.52.3e-182583357
              --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
  Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
              k  ++t+eq+e+Le++++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  OMO67453 25 KYVRYTAEQVEALERVYAECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 83
              56789****************************************************97 PP

2START157.79.5e-501653722204
               HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXXTT CS
     START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvaelqa 100
               +aee+++e+++ka+ ++  Wv+++ +++g++++ +f+ s+++sg a+ra+g+v  +++   +e+l+d++ W + ++  e+      g  g+++l +++++a
  OMO67453 165 IAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQSCSGVAARACGLVSLEPT-KIAEILKDRPSWFRECRNLEVFTMFPAGngGTIELVYTQTYA 264
               7899******************************************************.7777777777*******9999999998888************ PP

               XX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHH CS
     START 101 lsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwv 197
               +++l+p Rdf+++Ry+ +l+ g++v++++S++     p+    +++vRae+lpSg+li+p+++g+s +++v+h +l++++++++lr+l++s+ + ++k++ 
  OMO67453 265 PTTLAPaRDFWTLRYTTTLENGSLVVCERSLSGSGAGPSaaaAAQFVRAEMLPSGYLIRPCEGGGSIIHIVDHLNLEAWSVPEVLRPLYESSKVIAQKMTI 365
               ********************************99999988999********************************************************** PP

               HHTXXXX CS
     START 198 atlqrqc 204
               a+l++ +
  OMO67453 366 AALRYIR 372
               **99865 PP

Sequence ? help Back to Top
Protein Sequence    Length: 844 aa     Download sequence    
MAMAVAHHRE SSSGSSINKH LDPGKYVRYT AEQVEALERV YAECPKPSSL RRQQLIRECP  60
ILSNIEPKQI KVWFQNRRCR EKQRKESSRL QTVNRKLSAM NKLLMEENDR LQKQVSQLVC  120
ENGYMRQQLH TVNASAATDA SCDSVVTTPQ QSMRDASNPA GLLSIAEETL AEFLSKATGT  180
AVDWVQMPGM KPGPDSVGIF AISQSCSGVA ARACGLVSLE PTKIAEILKD RPSWFRECRN  240
LEVFTMFPAG NGGTIELVYT QTYAPTTLAP ARDFWTLRYT TTLENGSLVV CERSLSGSGA  300
GPSAAAAAQF VRAEMLPSGY LIRPCEGGGS IIHIVDHLNL EAWSVPEVLR PLYESSKVIA  360
QKMTIAALRY IRQIAQETSG EVVYGLGRQP AVLRTFSQRL SRGFNDAING FNDDGWSIMN  420
CDGAEDVIIA INSSKSLSST SNPANALSFL GGVLCAKASM LLQNVPPAVL VRFLREHRSE  480
WADFNVDAYS AASLKAGTYA YPGMRPTRFT GSQIIMPLGH TIEHEELLEV IRLEGHSLVQ  540
EDAFLSRDIH LLQICSGIDE NAVGACSELV FAPIDEMFPD DAPLLPSGFR IIPLDSKPSD  600
TQDSVTTNRT LDLTSSLEVG PATNNAAGDA PSQNTRSVLT IAFQFPFDSN LQDNVATMAR  660
QYVRSVISSV QRVAMAISPS GLSPTVGTKL SPGSPEALTL AHWICQSYSY HLGAELLRSE  720
SLGGDSVLKN LWQHQDAILC CSLKSLPVFI FANQAGLDML ETTLVALQDI TLDKIFDESG  780
RKALCSDFAK LMQQGFAYLP AGICMSTMGR HVSYEQAVAW KVLAADDEST VHCLAFSFVN  840
WSFV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein