PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO67446
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family ARF
Protein Properties Length: 708aa    MW: 77794.1 Da    PI: 7.7128
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO67446genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.32.8e-23110211199
               EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
               f k+lt+sd+++ g +++p+ +ae++         ++ +  t++ +d +g+ W++++iyr++++r++lt+GW+ Fv++++L +gD++vF   + +++ l+v
  OMO67446 110 FAKTLTQSDANNGGGFSVPRYCAETIfprldytADPPVQ--TVIAKDVHGEIWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFL--RAENGDLCV 206
               89****************************997556555..8************************************************..4488999** PP

               EEE-S CS
        B3  95 kvfrk 99 
               +++r+
  OMO67446 207 GIRRA 211
               **997 PP

2Auxin_resp113.71.7e-37274357183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                 a+  a+++++Fev+Y+Prast+eF+vk+++v+ a++++++ GmRfkmafetedss++++ +Gtv++v+ +dp+rWpnS Wr+L+
    OMO67446 274 AVALAASGQPFEVIYYPRASTPEFCVKASSVRVAMRIHWCSGMRFKMAFETEDSSRISWfMGTVSSVQVADPIRWPNSLWRLLQ 357
                 567899****************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence    Length: 708 aa     Download sequence    
MKEPEKSLDP QLWHACAGSM VQIPPVNSKV FYFPQGHAEH SLTSVDFSTS AQIPALVLCR  60
VASVKYLADS ETDEVYAKMM LVPLPNTELD VEDDGVLVAG SDNVEKPASF AKTLTQSDAN  120
NGGGFSVPRY CAETIFPRLD YTADPPVQTV IAKDVHGEIW KFRHIYRGTP RRHLLTTGWS  180
TFVNQKKLVA GDSIVFLRAE NGDLCVGIRR AKRGIGNGPE CVAAGWNSGL GNGNCVNNPY  240
GGFSGFLRED ESKVMRNGNS RVKGKVRPEA VLEAVALAAS GQPFEVIYYP RASTPEFCVK  300
ASSVRVAMRI HWCSGMRFKM AFETEDSSRI SWFMGTVSSV QVADPIRWPN SLWRLLQVTW  360
DEPDLLQNVK RVSPWLVELV SNMPAIHLSP FSPPRKKLRL PQHLDFPLDG QFPMPSFTGN  420
PLGPNSPLHC LSDNAPAGIQ GARHAQFGLS LSDLHLNNKL QSGLFLSSLQ RFDSHSRVSN  480
GIVMARRTSS NDNLSCLLTM GNSGQKEKSE NTKRHQFLLF GQPILTEQQL SRSCSSEAVS  540
QVINGKSSLD GNAEKAKDSS DGSASVLENQ FSPEKSSPAG FLWNQEYRTA ELGLDTGHCK  600
VFLESEDVGR TLDLSVLGSY EELYRKLANM FGIERSDMLG RVLYRDATGA VKQTGDEPFS  660
AFMKTTKRLT IMMNSGNDTV GRSWLTGIRT AENGLDGPNK TGPLSIFA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28350.10.0ARF family protein