PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMO67446 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
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Family | ARF | ||||||||
Protein Properties | Length: 708aa MW: 77794.1 Da PI: 7.7128 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 73.3 | 2.8e-23 | 110 | 211 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 f k+lt+sd+++ g +++p+ +ae++ ++ + t++ +d +g+ W++++iyr++++r++lt+GW+ Fv++++L +gD++vF + +++ l+v OMO67446 110 FAKTLTQSDANNGGGFSVPRYCAETIfprldytADPPVQ--TVIAKDVHGEIWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFL--RAENGDLCV 206 89****************************997556555..8************************************************..4488999** PP EEE-S CS B3 95 kvfrk 99 +++r+ OMO67446 207 GIRRA 211 **997 PP | |||||||
2 | Auxin_resp | 113.7 | 1.7e-37 | 274 | 357 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 a+ a+++++Fev+Y+Prast+eF+vk+++v+ a++++++ GmRfkmafetedss++++ +Gtv++v+ +dp+rWpnS Wr+L+ OMO67446 274 AVALAASGQPFEVIYYPRASTPEFCVKASSVRVAMRIHWCSGMRFKMAFETEDSSRISWfMGTVSSVQVADPIRWPNSLWRLLQ 357 567899****************************************************************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 708 aa Download sequence |
MKEPEKSLDP QLWHACAGSM VQIPPVNSKV FYFPQGHAEH SLTSVDFSTS AQIPALVLCR 60 VASVKYLADS ETDEVYAKMM LVPLPNTELD VEDDGVLVAG SDNVEKPASF AKTLTQSDAN 120 NGGGFSVPRY CAETIFPRLD YTADPPVQTV IAKDVHGEIW KFRHIYRGTP RRHLLTTGWS 180 TFVNQKKLVA GDSIVFLRAE NGDLCVGIRR AKRGIGNGPE CVAAGWNSGL GNGNCVNNPY 240 GGFSGFLRED ESKVMRNGNS RVKGKVRPEA VLEAVALAAS GQPFEVIYYP RASTPEFCVK 300 ASSVRVAMRI HWCSGMRFKM AFETEDSSRI SWFMGTVSSV QVADPIRWPN SLWRLLQVTW 360 DEPDLLQNVK RVSPWLVELV SNMPAIHLSP FSPPRKKLRL PQHLDFPLDG QFPMPSFTGN 420 PLGPNSPLHC LSDNAPAGIQ GARHAQFGLS LSDLHLNNKL QSGLFLSSLQ RFDSHSRVSN 480 GIVMARRTSS NDNLSCLLTM GNSGQKEKSE NTKRHQFLLF GQPILTEQQL SRSCSSEAVS 540 QVINGKSSLD GNAEKAKDSS DGSASVLENQ FSPEKSSPAG FLWNQEYRTA ELGLDTGHCK 600 VFLESEDVGR TLDLSVLGSY EELYRKLANM FGIERSDMLG RVLYRDATGA VKQTGDEPFS 660 AFMKTTKRLT IMMNSGNDTV GRSWLTGIRT AENGLDGPNK TGPLSIFA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28350.1 | 0.0 | ARF family protein |
Link Out ? help Back to Top | |
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Ensembl | OMO67446 |