PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO67422

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

GATA

Protein Properties

Length: 906aa MW: 99864.8 Da PI: 8.3944

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO67422	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	56.3	4.2e-18	251	285	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +C +tkTp+WR+gp g+ktLCnaCG++yr+ +l OMO67422 251 CMHCEVTKTPQWREGPMGPKTLCNACGVRYRSGRL 285 99*****************************9986 PP
2	GATA	54	2.3e-17	489	523	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +Cg+t+T++WR+gp g+ktLCnaCG++yr+ +l OMO67422 489 CMHCGVTETAQWRQGPMGKKTLCNACGVRYRSGRL 523 99*****************************9986 PP
3	GATA	55.5	7.7e-18	772	806	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +Cg+t+TplWR gp g+ktLCnaCG++yr+ +l OMO67422 772 CMHCGVTETPLWRDGPMGKKTLCNACGVRYRSGRL 806 99*****************************9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 906 aa Download sequence
MNDPWFDKGL NGVSDDLFNF DDVINYFDDL PPEDVDLSGG SILPLDDVEE NNAGVDGGEE 60 WDCNFQNLEP PPANVLASLS SGFYGDFFTD TLPKNVTVSC DGSSQLTERS STIKASSSRS 120 ITQHSESGDV KGSSRFQTSS PVSVLESSSS CSAANSTPIN PKLCFLVKRG RSKRRRASTF 180 NLPFALPFIS STSSTSRGSN SLVGSESESE SHLTEKHAKK RQMKKKNLTL LSGSSETKDS 240 PSQQPGVVRK CMHCEVTKTP QWREGPMGPK TLCNACGVRY RSGRLLPEYR PAASPTFVPS 300 LHSNSHKKEA HDGVLDFLDA PMEEAMEEWT TEVLASPCDD LDSLPCLFHF DSYDSTPREG 360 KEKGKNSSML SGSTEMKNQV DDINPVVAAL PLASKETTNK TEREVALELA ASSSFLPPKK 420 RSHRLAFLRC SYFLETLQTK RTMKHDKEKI KKPSDSEALN SIELPLVSGS GENKDSSSPR 480 PVVVKKCKCM HCGVTETAQW RQGPMGKKTL CNACGVRYRS GRLLPEYRPA ASPTFVPSLH 540 SSSHKKVVEM REKAMLSKSP SDNLDNLPCL FHSDSHHGTP RTIPVEGKKK EKNLSMLSSG 600 MEMKNQVDVS NGGIAPLPLE SKETTNKTEM EVVLASSSSS VAPLPENEGS GPCPLQSSTF 660 LPPRRSHRLA FLRCSDFLAT LQTTRTEKQG KDKIKEQSEA LNSIELRRSH RLAFLRCSDF 720 LETLQTTSSE KQDKEKIKEQ SEALNSIELP LVSGSSENKD SSSPRPVVVK KCMHCGVTET 780 PLWRDGPMGK KTLCNACGVR YRSGRLLPEY RPAASPTFVP SLHSNSHKKV VEMRKRTNLS 840 KSPLDNLDSL PCVFQSDSHH GTPRTIPVEG KKKEKKLSME MKNQVDESNC GIAPLPLRVR 900 RDNRQN

Sequence ? help Back to Top

Protein Sequence Length: 906 aa Download sequence

MNDPWFDKGL NGVSDDLFNF DDVINYFDDL PPEDVDLSGG SILPLDDVEE NNAGVDGGEE  60
WDCNFQNLEP PPANVLASLS SGFYGDFFTD TLPKNVTVSC DGSSQLTERS STIKASSSRS  120
ITQHSESGDV KGSSRFQTSS PVSVLESSSS CSAANSTPIN PKLCFLVKRG RSKRRRASTF  180
NLPFALPFIS STSSTSRGSN SLVGSESESE SHLTEKHAKK RQMKKKNLTL LSGSSETKDS  240
PSQQPGVVRK CMHCEVTKTP QWREGPMGPK TLCNACGVRY RSGRLLPEYR PAASPTFVPS  300
LHSNSHKKEA HDGVLDFLDA PMEEAMEEWT TEVLASPCDD LDSLPCLFHF DSYDSTPREG  360
KEKGKNSSML SGSTEMKNQV DDINPVVAAL PLASKETTNK TEREVALELA ASSSFLPPKK  420
RSHRLAFLRC SYFLETLQTK RTMKHDKEKI KKPSDSEALN SIELPLVSGS GENKDSSSPR  480
PVVVKKCKCM HCGVTETAQW RQGPMGKKTL CNACGVRYRS GRLLPEYRPA ASPTFVPSLH  540
SSSHKKVVEM REKAMLSKSP SDNLDNLPCL FHSDSHHGTP RTIPVEGKKK EKNLSMLSSG  600
MEMKNQVDVS NGGIAPLPLE SKETTNKTEM EVVLASSSSS VAPLPENEGS GPCPLQSSTF  660
LPPRRSHRLA FLRCSDFLAT LQTTRTEKQG KDKIKEQSEA LNSIELRRSH RLAFLRCSDF  720
LETLQTTSSE KQDKEKIKEQ SEALNSIELP LVSGSSENKD SSSPRPVVVK KCMHCGVTET  780
PLWRDGPMGK KTLCNACGVR YRSGRLLPEY RPAASPTFVP SLHSNSHKKV VEMRKRTNLS  840
KSPLDNLDSL PCVFQSDSHH GTPRTIPVEG KKKEKKLSME MKNQVDESNC GIAPLPLRVR  900
RDNRQN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	419	423	KKRSH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08010.2	2e-45	GATA family protein

Link Out ? help Back to Top
Ensembl	OMO67422