PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO67350
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family C3H
Protein Properties Length: 348aa    MW: 38692.1 Da    PI: 7.6024
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO67350genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.35.4e-08112132526
               --SGGGGTS--TTTTT-SS-SS CS
   zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                C++f++ G C+ Gd+C FaHg
  OMO67350 112 ACPDFRK-GNCRKGDSCEFAHG 132
               7******.*************9 PP

Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    
MAEVYSPLKY NAVDNHFNNS SNPFYLQEAL AALQRYLPSN EPDVESDSEL SGLDNPDSPV  60
DAYSCDHFRM FEFKIRRCAR GRSHDWTECP YAHPGEKARR RDPRKYHYSG TACPDFRKGN  120
CRKGDSCEFA HGVFECWLHP ARYRTQPCKD GPGCRRRVCF FAHTPDQLRV VNSADSYDGS  180
SPSGAKTLTF WSSPGSPPVS PRAESSPPVS PMAQTLSRSL GSASINEMVA SLRNLQLGKV  240
KSMPSSWNAQ VGCSSPSSFG SPRGPVIRPG FCSLPSTPTQ NLTRPGIGYL DFWDEGCEEE  300
PVMERVESGR DLRAKMFEKL SKENSLKRVN PGQFSGGPDV NWVSDLVE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29190.11e-139C3H family protein