PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMO67350 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
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Family | C3H | ||||||||
Protein Properties | Length: 348aa MW: 38692.1 Da PI: 7.6024 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.3 | 5.4e-08 | 112 | 132 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C++f++ G C+ Gd+C FaHg OMO67350 112 ACPDFRK-GNCRKGDSCEFAHG 132 7******.*************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 348 aa Download sequence |
MAEVYSPLKY NAVDNHFNNS SNPFYLQEAL AALQRYLPSN EPDVESDSEL SGLDNPDSPV 60 DAYSCDHFRM FEFKIRRCAR GRSHDWTECP YAHPGEKARR RDPRKYHYSG TACPDFRKGN 120 CRKGDSCEFA HGVFECWLHP ARYRTQPCKD GPGCRRRVCF FAHTPDQLRV VNSADSYDGS 180 SPSGAKTLTF WSSPGSPPVS PRAESSPPVS PMAQTLSRSL GSASINEMVA SLRNLQLGKV 240 KSMPSSWNAQ VGCSSPSSFG SPRGPVIRPG FCSLPSTPTQ NLTRPGIGYL DFWDEGCEEE 300 PVMERVESGR DLRAKMFEKL SKENSLKRVN PGQFSGGPDV NWVSDLVE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29190.1 | 1e-139 | C3H family protein |
Link Out ? help Back to Top | |
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Ensembl | OMO67350 |