PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO67291

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

C3H

Protein Properties

Length: 612aa MW: 68103 Da PI: 7.1059

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO67291	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18	5.2e-06	329	343	12	26
TS--TTTTT-SS-SS CS zf-CCCH 12 tGtCkyGdrCkFaHg 26 +G C++G++C+F H+ OMO67291 329 SGNCPRGEKCNFQHD 343 69************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 612 aa Download sequence
MAPPRILLCG DVLGRLSQLF KRVNSVNKSA GPFDALFCVG QFFPDETDRL DELMDYVEGR 60 AQIPLPTYFI GDYGVGAPKV LSVASKNSAN QGFKMDGFKI CDNLFWLKGS GKFTLHGLFV 120 AYLSGRQSSS GQQFGTYGQD DIDALRAFAE EPGIVDLFLT YPLLFFTNEW PSGVTNRANE 180 SDIPAGILDS TGSDSTVAQL VAEIKPRYHI AGTKGAFYAR EPYSNVDAMH VTRFLGLASV 240 GNKDKQKFLH ALSPTPSSAM SAAEISAKPP NTTLSPYTLA DQADHPKEST KRAGDSLPDS 300 QYWRYDVSNK RQKHGSGDGN KVCFKFISSG NCPRGEKCNF QHDVDAREQF LRGVCLDFII 360 KGKCEKGPDC NFKHSLQDEG ESYTSRRPGS GNINRSKECW FCLSSPNVDS HLVISIGENF 420 YCALAKGPLV QDHALIIPVE HLPNTLCLPE DSEIELGKYR NSLKMYYKNQ GKDAVFFEWI 480 SVRSSHANLQ AIPVPSSKTA ALKDIFNLAA KKLGFEFVTK KFNNNSEGRK WLRTQFDKNL 540 SCFYVELPDG SILLHVIEEN EKFPAQFGRE VLAGLLNMAD RADWRNCTPG KEEETMLAEN 600 FKKRFQVFDP SQ

Sequence ? help Back to Top

Protein Sequence Length: 612 aa Download sequence

MAPPRILLCG DVLGRLSQLF KRVNSVNKSA GPFDALFCVG QFFPDETDRL DELMDYVEGR  60
AQIPLPTYFI GDYGVGAPKV LSVASKNSAN QGFKMDGFKI CDNLFWLKGS GKFTLHGLFV  120
AYLSGRQSSS GQQFGTYGQD DIDALRAFAE EPGIVDLFLT YPLLFFTNEW PSGVTNRANE  180
SDIPAGILDS TGSDSTVAQL VAEIKPRYHI AGTKGAFYAR EPYSNVDAMH VTRFLGLASV  240
GNKDKQKFLH ALSPTPSSAM SAAEISAKPP NTTLSPYTLA DQADHPKEST KRAGDSLPDS  300
QYWRYDVSNK RQKHGSGDGN KVCFKFISSG NCPRGEKCNF QHDVDAREQF LRGVCLDFII  360
KGKCEKGPDC NFKHSLQDEG ESYTSRRPGS GNINRSKECW FCLSSPNVDS HLVISIGENF  420
YCALAKGPLV QDHALIIPVE HLPNTLCLPE DSEIELGKYR NSLKMYYKNQ GKDAVFFEWI  480
SVRSSHANLQ AIPVPSSKTA ALKDIFNLAA KKLGFEFVTK KFNNNSEGRK WLRTQFDKNL  540
SCFYVELPDG SILLHVIEEN EKFPAQFGRE VLAGLLNMAD RADWRNCTPG KEEETMLAEN  600
FKKRFQVFDP SQ

Link Out ? help Back to Top
Ensembl	OMO67291