PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO67275

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

HSF

Protein Properties

Length: 495aa MW: 54806.1 Da PI: 4.7335

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO67275	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	112.9	2.1e-35	150	241	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k++e++ed+e++ ++sws n nsf+v+d+++f++++LpkyFkh+nf+SF+RQLn+YgF+k+++++ weF+++ F+ gkk+ll++ik OMO67275 150 FLRKTFEMVEDPETDPIVSWSVNRNSFIVWDSHKFSENLLPKYFKHKNFSSFIRQLNTYGFRKIDSDR---------WEFANEGFQGGKKHLLKNIK 237 9******************999*************************************999.........****************** PP XXXX CS HSF_DNA-bind 99 rkks 102 r+++ OMO67275 238 RRSR 241 *986 PP

Sequence ? help Back to Top
Protein Sequence Length: 495 aa Download sequence
MLNPDGGGGG GGGGSLASSC YTTAVPFVKE SKRMGDKEQE NGDESKLNVI VVKEEPVAAV 60 EAVTPATESS AATCGGGGGG GEDEEAAFLK AVKVEQNEEG EDEEMGVVDD MMNGGDCKNN 120 IFNNGSSSSS SSDALVKPLE GLHESGPPPF LRKTFEMVED PETDPIVSWS VNRNSFIVWD 180 SHKFSENLLP KYFKHKNFSS FIRQLNTYGF RKIDSDRWEF ANEGFQGGKK HLLKNIKRRS 240 RYNKQQQGGI VSAVSPTSIG LEAEVEVLKK HQSALQLEVS KLKQQQEESN HQLSAFEERI 300 RFAECKQQQM CNFFAKMAKY PNFIQQLVQK RKLQKKGLDE GEFIKKRKFL ETQVTKSLPY 360 KAMESGTDPS VKCSNQVDQE GLDSIQADNE FPRFLPDGMA NNHEIEKEFS VSMEDGLCRS 420 FQAQKSSSAA EMSSVYHVMS ENLLGESSVV ENPTNEDQLS VNDSKIYLEL EDLINWKPCS 480 WGGFASELVE QTGVV

Sequence ? help Back to Top

Protein Sequence Length: 495 aa Download sequence

MLNPDGGGGG GGGGSLASSC YTTAVPFVKE SKRMGDKEQE NGDESKLNVI VVKEEPVAAV  60
EAVTPATESS AATCGGGGGG GEDEEAAFLK AVKVEQNEEG EDEEMGVVDD MMNGGDCKNN  120
IFNNGSSSSS SSDALVKPLE GLHESGPPPF LRKTFEMVED PETDPIVSWS VNRNSFIVWD  180
SHKFSENLLP KYFKHKNFSS FIRQLNTYGF RKIDSDRWEF ANEGFQGGKK HLLKNIKRRS  240
RYNKQQQGGI VSAVSPTSIG LEAEVEVLKK HQSALQLEVS KLKQQQEESN HQLSAFEERI  300
RFAECKQQQM CNFFAKMAKY PNFIQQLVQK RKLQKKGLDE GEFIKKRKFL ETQVTKSLPY  360
KAMESGTDPS VKCSNQVDQE GLDSIQADNE FPRFLPDGMA NNHEIEKEFS VSMEDGLCRS  420
FQAQKSSSAA EMSSVYHVMS ENLLGESSVV ENPTNEDQLS VNDSKIYLEL EDLINWKPCS  480
WGGFASELVE QTGVV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	233	239	LKNIKRR
2	330	348	KRKLQKKGLDEGEFIKKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26150.1	2e-80	HSF family protein

Link Out ? help Back to Top
Ensembl	OMO67275