PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO67272

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

C3H

Protein Properties

Length: 844aa MW: 93394.2 Da PI: 9.1968

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO67272	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.6	8.1e-07	396	416	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C f+ G C +Gd C F+H OMO67272 396 PCTSFMTKGSCVRGDACLFSH 416 7******************** PP

Sequence ? help Back to Top
Protein Sequence Length: 844 aa Download sequence
MEEPQEPHVE APFSFPPLRR SHLRSGTYHN LVRFISLCYG DSSLATAPPI IPLHRTPGEP 60 VGDDVREPLE SIVPDNMQQA QEGNVVNGGF EGAAFKDRRL SNTQMVVDEI EQIMRVEEDE 120 DSKPSEKVEN QGFLFKPSAM HEKTEIQQKE MELEKFVCTN DGIPSPVRMV EDEEPEEGEI 180 FGDIQHVNES VDILIEDALL LQKKEEEKQD SGCALDGKHL RCNEVSTAYD KDLQTAQIAN 240 RVTEVDPKGN ERAQMVSKLG KMHRKEGSGK VIKQSGSENQ VIKSIEKKDV GVCNKNKQGQ 300 SPAKKKEKKK RNKRKRRAEK NKQLGVKRLK LETVLKPRVV SYCRHYLKGR CYEGEKCKYS 360 HDTVPLTKSQ PCCHFARQSC MKGDECPFDH ELSKYPCTSF MTKGSCVRGD ACLFSHKMSR 420 EENVASTTNA RDLQLKPSLH SDSNMRLDMS RNVEASSCSA GASSQQTKQI VADTQMKTPD 480 LARKGVNYLF HSKSCIAEPS KLSQGGSSQK MKESDRVGIQ SNQSTPVVNS TFASKRSVAE 540 LGKFSEGSSS LKMSKAIQAS ESGTIQIVNG SPKRKTEVVP RGINFLSVGK SSLEDSTSKV 600 SLALYRGDGY KQQPAEKNQT TRSALSMDQR KGHPAVVPVG IDFPTFGKSC NSRINEASIP 660 SRADMVNNGS LQKSNYVSDK QHYLSPISYK LPVSPQTSGQ SSGRLLHKNT PNSTQKALIS 720 TLEGDKKFSD VNSGSPHEGQ HLSDKQCNSN LNPWKIPAHP LGTGQTSEKM SHTNTPNSAQ 780 KGVMSTLAFA AKCESRMKKN QSNVSSGHNS ETRESKISEG SRDLEKTSKL LEFLSGFSSK 840 RKQI

Sequence ? help Back to Top

Protein Sequence Length: 844 aa Download sequence

MEEPQEPHVE APFSFPPLRR SHLRSGTYHN LVRFISLCYG DSSLATAPPI IPLHRTPGEP  60
VGDDVREPLE SIVPDNMQQA QEGNVVNGGF EGAAFKDRRL SNTQMVVDEI EQIMRVEEDE  120
DSKPSEKVEN QGFLFKPSAM HEKTEIQQKE MELEKFVCTN DGIPSPVRMV EDEEPEEGEI  180
FGDIQHVNES VDILIEDALL LQKKEEEKQD SGCALDGKHL RCNEVSTAYD KDLQTAQIAN  240
RVTEVDPKGN ERAQMVSKLG KMHRKEGSGK VIKQSGSENQ VIKSIEKKDV GVCNKNKQGQ  300
SPAKKKEKKK RNKRKRRAEK NKQLGVKRLK LETVLKPRVV SYCRHYLKGR CYEGEKCKYS  360
HDTVPLTKSQ PCCHFARQSC MKGDECPFDH ELSKYPCTSF MTKGSCVRGD ACLFSHKMSR  420
EENVASTTNA RDLQLKPSLH SDSNMRLDMS RNVEASSCSA GASSQQTKQI VADTQMKTPD  480
LARKGVNYLF HSKSCIAEPS KLSQGGSSQK MKESDRVGIQ SNQSTPVVNS TFASKRSVAE  540
LGKFSEGSSS LKMSKAIQAS ESGTIQIVNG SPKRKTEVVP RGINFLSVGK SSLEDSTSKV  600
SLALYRGDGY KQQPAEKNQT TRSALSMDQR KGHPAVVPVG IDFPTFGKSC NSRINEASIP  660
SRADMVNNGS LQKSNYVSDK QHYLSPISYK LPVSPQTSGQ SSGRLLHKNT PNSTQKALIS  720
TLEGDKKFSD VNSGSPHEGQ HLSDKQCNSN LNPWKIPAHP LGTGQTSEKM SHTNTPNSAQ  780
KGVMSTLAFA AKCESRMKKN QSNVSSGHNS ETRESKISEG SRDLEKTSKL LEFLSGFSSK  840
RKQI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	304	317	KKKEKKKRNKRKRR

Link Out ? help Back to Top
Ensembl	OMO67272