PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO66918
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family GATA
Protein Properties Length: 293aa    MW: 31558.1 Da    PI: 9.3046
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO66918genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.54.4e-19151184134
      GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
               Cs C+tt+TplWR+gp+g+k+LCnaCG+++rk +
  OMO66918 151 CSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKAR 184
               *******************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    
MNSHEGSSSD IQQASSSSSI SVHESPMHED HSAAAIHGGH KLTLGRKEED GDHYESASDN  60
NNDGSSVKWM SSKMRLMKKM MTNSSNCGGG GGGGEISAAD HNMNSNKLPL KIRHKFHQYQ  120
MHDNSDETNN NNSFMSKSTI NNNNNTTVRV CSDCNTTTTP LWRSGPRGPK SLCNACGIRQ  180
RKARRAMEAA AAAGNTGEAA VVATDNVTST TTTAAAAAST GMKIKVHINK EKKGRVGQYK  240
NKQSPQSQKK LICFKEFALS LSKNSSALQR VFPQDVEDAA ILLMELSCGL IHT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56860.15e-19GATA family protein