PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMO66883 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
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Family | C3H | ||||||||
Protein Properties | Length: 364aa MW: 40180 Da PI: 7.8854 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 25.4 | 2.5e-08 | 123 | 143 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C++f++ G Ck Gd+C FaHg OMO66883 123 ACPDFRK-GNCKKGDSCEFAHG 143 7******.*************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 364 aa Download sequence |
MMIGEPARPN PTVKIPAWDP FNDPTANFPS NFNCNAPSSP CPVDYLTSLH RYLPSNDFES 60 DSFSEDSDLP VDAFSCDHFR MYEFKVRRCA RGRSHDWTEC PYAHPGEKAR RRDPRKFHYS 120 GTACPDFRKG NCKKGDSCEF AHGVFECWLH PARYRTQPCK DGTSCKRRVC FFAHTPEQLR 180 VLPPQSPSPR GNGSGSGDLD YVGSPVRHRF DMVSSPTSIL VSPPVSPPSD SPPMSPCGSF 240 NSASELVANM RNLQLGKAKM SGAGACSWGL QMGSGYGSPR GSTLRPGFCS SPSTPTRTPT 300 RSGLAQFDLW ECNAFEEEPA MERVESGRDL RARMYAKLSK ENSLNQLDPT GSGPDVGWVS 360 ELVK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G19810.1 | 1e-111 | C3H family protein |
Link Out ? help Back to Top | |
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Ensembl | OMO66883 |