PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO66883
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family C3H
Protein Properties Length: 364aa    MW: 40180 Da    PI: 7.8854
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO66883genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.42.5e-08123143526
               --SGGGGTS--TTTTT-SS-SS CS
   zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                C++f++ G Ck Gd+C FaHg
  OMO66883 123 ACPDFRK-GNCKKGDSCEFAHG 143
               7******.*************9 PP

Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    
MMIGEPARPN PTVKIPAWDP FNDPTANFPS NFNCNAPSSP CPVDYLTSLH RYLPSNDFES  60
DSFSEDSDLP VDAFSCDHFR MYEFKVRRCA RGRSHDWTEC PYAHPGEKAR RRDPRKFHYS  120
GTACPDFRKG NCKKGDSCEF AHGVFECWLH PARYRTQPCK DGTSCKRRVC FFAHTPEQLR  180
VLPPQSPSPR GNGSGSGDLD YVGSPVRHRF DMVSSPTSIL VSPPVSPPSD SPPMSPCGSF  240
NSASELVANM RNLQLGKAKM SGAGACSWGL QMGSGYGSPR GSTLRPGFCS SPSTPTRTPT  300
RSGLAQFDLW ECNAFEEEPA MERVESGRDL RARMYAKLSK ENSLNQLDPT GSGPDVGWVS  360
ELVK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.11e-111C3H family protein