PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO66525

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

MYB

Protein Properties

Length: 395aa MW: 43236 Da PI: 6.3268

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO66525	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.4	1.4e-17	49	94	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd +l d+v ++G+++W++Iar + gR++k+c++rw + OMO66525 49 KGPWSPEEDAILSDLVSKFGPRNWSLIARGIA-GRSGKSCRLRWCNQ 94 79****************************.*********985 PP
2	Myb_DNA-binding	55.5	1.3e-17	101	145	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r++++ eEd+l++ a++ +G++ W+ Iar ++ gRt++ +k++w++ OMO66525 101 RKPFSDEEDQLIISAHAVHGNK-WAVIARLLP-GRTDNAIKNHWNST 145 789*****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 395 aa Download sequence
MEEAVENGND TTVTEANLQL STDGGDVAEE GGSRDDSRGG GRTRKDRVKG PWSPEEDAIL 60 SDLVSKFGPR NWSLIARGIA GRSGKSCRLR WCNQLDPAVK RKPFSDEEDQ LIISAHAVHG 120 NKWAVIARLL PGRTDNAIKN HWNSTLRRRY MDLGRKSESE NMVEDASFDK TKASSEETLS 180 CAEDSSFRSL EGKDISSSEK ADNQLKGKAL TGIQTSREAV EPTTLFRPVA RFSAFNVYNN 240 LDGPELASPC SRSAPMQGSL CQSSKADSGI CKLLEGVYTE RLVPLKCGHG CCGTQNGRNH 300 SNSLLGPEFV EFSEPPSFPN YELATIAADI SNLAWLKSGL ESNSIRATDD AASGASSHKS 360 QVYKGHLEES RMSDHFRIEE RNNKLMGRMT NLLST

Sequence ? help Back to Top

Protein Sequence Length: 395 aa Download sequence

MEEAVENGND TTVTEANLQL STDGGDVAEE GGSRDDSRGG GRTRKDRVKG PWSPEEDAIL  60
SDLVSKFGPR NWSLIARGIA GRSGKSCRLR WCNQLDPAVK RKPFSDEEDQ LIISAHAVHG  120
NKWAVIARLL PGRTDNAIKN HWNSTLRRRY MDLGRKSESE NMVEDASFDK TKASSEETLS  180
CAEDSSFRSL EGKDISSSEK ADNQLKGKAL TGIQTSREAV EPTTLFRPVA RFSAFNVYNN  240
LDGPELASPC SRSAPMQGSL CQSSKADSGI CKLLEGVYTE RLVPLKCGHG CCGTQNGRNH  300
SNSLLGPEFV EFSEPPSFPN YELATIAADI SNLAWLKSGL ESNSIRATDD AASGASSHKS  360
QVYKGHLEES RMSDHFRIEE RNNKLMGRMT NLLST

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G09230.1	1e-108	MYB family protein

Link Out ? help Back to Top
Ensembl	OMO66525