PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMO66344 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
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Family | GRAS | ||||||||
Protein Properties | Length: 749aa MW: 85670.6 Da PI: 6.4746 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 395 | 8.2e-121 | 376 | 747 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101 l++lL++cA+av+++d++ a++lL+++++++sp gd +qRla++f+ +L+arla+++s++yk+l +++ts s+ l+a+ l++ +sP+ k+sh+++N++ OMO66344 376 LRTLLIHCAQAVAADDQRTANELLKKIRQHSSPFGDGNQRLAHCFADGLEARLAGTGSHIYKSLVSKRTS---ASDILKAYYLYVAASPFRKVSHFICNKT 473 6789*************************************************************99999...9*************************** PP GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgE 200 I a ++ ++HiiDf+i +G+QWp++++ ++ R++gpp lRiTg++ p++g +e++eetg+rLa +Aee++vpf++n+ +ak++e+++leeL+++ +E OMO66344 474 INLASRKSMKLHIIDFGILYGFQWPTIMERFSLRSNGPPLLRITGIDFPQPGfrPAERVEETGRRLAAYAEEFKVPFQYNA-IAKKWENITLEELDIHDDE 573 ***************************************************9*****************************.7****************** PP GRAS 201 alaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvace 301 ++Vn+ ++ ++lldesv+++s+r+ vL+l+k+++Pk++v+ + +n++ F++rf e l ++s++fd+le+ +pre+ er+++E+e++gre+ nv+ace OMO66344 574 FVVVNCLYRSKNLLDESVAVDSPRNMVLNLIKKINPKLFVFGIMNGAYNAPFFVTRFREVLFHFSSMFDMLETIVPREEWERMTIEKEIFGREALNVIACE 674 ***************************************************************************************************** PP GRAS 302 gaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 g er+er et+++W++r +aGF +vp++ +++k+a + ++ ++ + + ++e+s +lv+gWk+r L+++SaW+ OMO66344 675 GWERVERPETFKQWHARNLRAGFLQVPFEREIVKEATYRVQSFYHKDFLIDEDSRWLVQGWKGRILYALSAWK 747 ********************************************889*************************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 749 aa Download sequence |
MGMDPRFRGH SGFQLRNQTM SVFPNQPVSV FPNQNFVTVP RFQNTYIDHN FREFHYHPND 60 PTPSNTAPVP SLSHEEDPSD DCDFSDSVLR YISHILMEED KEDKSCMLQE SLDLQAAEKS 120 FYDVLGKKYP PSPDQNPSFF YESGENPNSY IDDSLVGNYN SFVDNCWMQN LGDYGNGTSQ 180 ALTLPVPSIS RSSYCSSIAS IDGMMESPNS TLQVPDLNGE IQSIWQFRKG VEEASKFIPR 240 SEDLFSNLEV YGVESQGWTN GVVVKEEKKD DVEYRNRPSG SKGRKISHRD DVDSEDERSS 300 KQAAVFEETD MRSEMFDMVL LCSTGKEPTK FTAFRESLRN GTGKIVQQSQ NGAPKGPKAG 360 KNRGKKQNGK KEVVDLRTLL IHCAQAVAAD DQRTANELLK KIRQHSSPFG DGNQRLAHCF 420 ADGLEARLAG TGSHIYKSLV SKRTSASDIL KAYYLYVAAS PFRKVSHFIC NKTINLASRK 480 SMKLHIIDFG ILYGFQWPTI MERFSLRSNG PPLLRITGID FPQPGFRPAE RVEETGRRLA 540 AYAEEFKVPF QYNAIAKKWE NITLEELDIH DDEFVVVNCL YRSKNLLDES VAVDSPRNMV 600 LNLIKKINPK LFVFGIMNGA YNAPFFVTRF REVLFHFSSM FDMLETIVPR EEWERMTIEK 660 EIFGREALNV IACEGWERVE RPETFKQWHA RNLRAGFLQV PFEREIVKEA TYRVQSFYHK 720 DFLIDEDSRW LVQGWKGRIL YALSAWKPA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 0.0 | GRAS family protein |
Link Out ? help Back to Top | |
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Ensembl | OMO66344 |