PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO65897

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

FAR1

Protein Properties

Length: 850aa MW: 97871.5 Da PI: 5.8736

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO65897	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	76.2	6.4e-24	98	183	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY+eYA++vGF +++ +s++skr+g++++ + Cs+ g+++e++++ ++r+ +tgC+a++++k+++d+kw ++++++eHnHe++ OMO65897 98 SFYREYARSVGFGITIVSSRRSKRSGKFIDVKVACSRFGSKRESSTT----LNPRSCPKTGCNARMHMKRRQDEKWIIHSFVKEHNHEIC 183 5***************************************99887....99*********************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 850 aa Download sequence
MEIDLELPSK EQEKLITDSN EDDDATDAVE EIDAEDNDEE PSATCELAEE VCEPNLIESS 60 TGCEDQADLN TVETDVCKGS IFEPENGMEF ESKEAAYSFY REYARSVGFG ITIVSSRRSK 120 RSGKFIDVKV ACSRFGSKRE SSTTLNPRSC PKTGCNARMH MKRRQDEKWI IHSFVKEHNH 180 EICADDFYYA TKGRNKQSGA VTCQKKGLQL ALDDEDVKLM LDYFISMQDK NPDFFYAIDL 240 DKEKCARSVF WIDAKGRQNY SHFSDVVFFD TFFVRNKYKI PYVPIIGVNH HFQYMLLGCA 300 LIGDSTTSSF VWLMRSWLKS VGGQAPKVII TDQDKVLNDA VADVFPDSCH CFCLWHVLSK 360 LPESLGFIIN QNENFMKKFD KCIRRSWTHE QFEKRWSRMI EKFELKEHEW VLSLYNDREK 420 WVPTYIQDTF LAGISTAERA GSIASFFDKF MHKEATFKEF LEQLKSLSID LYDKEAKADI 480 ETQNKQPELR SFSSFEKQMS MIYTDTIFKK FQVEILGVVS CHLQKESEDE DTVVFRVDDF 540 EERQNFLVAW NRREFHICCL CRSFEYRGFL CKHAILVLQI SGVSDIPSHY ILKRWTKEAK 600 IRQNLGEISN RLHYRVERFN DLCKRAIKLG EEGCLSEEAY TIALQTLEEA LKHCVCVNNS 660 AKSVFEPNTL SVHGFLEIEA EHHWSTMSKS LKKKKMYKRR KVHSQSEEVA VGQDSCQQMI 720 SSRAHMDGCY VTQNDMEGMD GGSRVPTLDG YYGSHQNIQG VGQLNLISPV RDGYYSNQQL 780 LGLGQLHSIP ARVNQYGTQQ STQGLGQLGF RAQPMQAFDI QDSLEDDDQS MNSIHFHGIA 840 SKHLHDKHLS

Sequence ? help Back to Top

Protein Sequence Length: 850 aa Download sequence

MEIDLELPSK EQEKLITDSN EDDDATDAVE EIDAEDNDEE PSATCELAEE VCEPNLIESS  60
TGCEDQADLN TVETDVCKGS IFEPENGMEF ESKEAAYSFY REYARSVGFG ITIVSSRRSK  120
RSGKFIDVKV ACSRFGSKRE SSTTLNPRSC PKTGCNARMH MKRRQDEKWI IHSFVKEHNH  180
EICADDFYYA TKGRNKQSGA VTCQKKGLQL ALDDEDVKLM LDYFISMQDK NPDFFYAIDL  240
DKEKCARSVF WIDAKGRQNY SHFSDVVFFD TFFVRNKYKI PYVPIIGVNH HFQYMLLGCA  300
LIGDSTTSSF VWLMRSWLKS VGGQAPKVII TDQDKVLNDA VADVFPDSCH CFCLWHVLSK  360
LPESLGFIIN QNENFMKKFD KCIRRSWTHE QFEKRWSRMI EKFELKEHEW VLSLYNDREK  420
WVPTYIQDTF LAGISTAERA GSIASFFDKF MHKEATFKEF LEQLKSLSID LYDKEAKADI  480
ETQNKQPELR SFSSFEKQMS MIYTDTIFKK FQVEILGVVS CHLQKESEDE DTVVFRVDDF  540
EERQNFLVAW NRREFHICCL CRSFEYRGFL CKHAILVLQI SGVSDIPSHY ILKRWTKEAK  600
IRQNLGEISN RLHYRVERFN DLCKRAIKLG EEGCLSEEAY TIALQTLEEA LKHCVCVNNS  660
AKSVFEPNTL SVHGFLEIEA EHHWSTMSKS LKKKKMYKRR KVHSQSEEVA VGQDSCQQMI  720
SSRAHMDGCY VTQNDMEGMD GGSRVPTLDG YYGSHQNIQG VGQLNLISPV RDGYYSNQQL  780
LGLGQLHSIP ARVNQYGTQQ STQGLGQLGF RAQPMQAFDI QDSLEDDDQS MNSIHFHGIA  840
SKHLHDKHLS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32250.2	0.0	FAR1 family protein

Link Out ? help Back to Top
Ensembl	OMO65897