PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO65883
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family GRAS
Protein Properties Length: 441aa    MW: 48053.4 Da    PI: 5.283
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO65883genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS381.11.3e-116794383374
      GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIl 103
                lLl+cAe+v+ ++l  a+ lL ++sel+sp g++ +R+ ayf+ AL+ar+++s+ ++y+ l +++ + ++s++ ++al+ ++ +sP++kfsh+taNqaI 
  OMO65883  79 GLLLQCAECVAMDNLDDATDLLPEISELSSPFGSSPERVGAYFAHALQARVVSSCLRTYSPLDTKSLTLTQSQKIFNALQSYNSISPLVKFSHFTANQAIF 179
               58*************************************************************************************************** PP

      GRAS 104 eavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaV 204
               +a++g++rvH+iD+di+qGlQWp L++ LasR+++  s+RiTg+gs    s+e le+tg+rLa+fA++lg+pfef++l  k  +  +l++L v++ Ea++V
  OMO65883 180 QALDGQDRVHVIDLDIMQGLQWPGLFHILASRSKKIRSMRITGFGS----SSELLESTGRRLADFATSLGLPFEFHPLEGKIGNVTDLSQLGVQSSEAVVV 276
               **********************************************....9**************************9777777779************** PP

      GRAS 205 nlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaer 305
               ++++  h l+d ++s       +L+l+  l+Pk++++veq+++h ++sFl rf+eal+yysalfd+l  +l+ +s er++vE++l+g ei+n+va  g +r
  OMO65883 277 HWMH--HCLYDITGSDLG----TLRLLTLLKPKLITIVEQDLSH-GGSFLGRFVEALHYYSALFDALGDGLGVDSLERHMVEQQLFGSEIRNIVAVGGPKR 370
               **99..777777777777....9*********************.789****************************************************9 PP

      GRAS 306 rerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
               + + + +e+W e l+++GF+pv+l+ + a+qa+lll +++++gy++ ee+g+l lgWkd +L+++SaW+
  OMO65883 371 TGEVK-VERWGEELRRVGFRPVSLGGNPAAQASLLLGMFPWKGYTLVEENGCLKLGWKDLSLLTASAWQ 438
               98887.9*************************************************************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    
MLQSLVPQSP INSNPSSNPN SSMKSKRADR DVSAATGDDS SADDPSTKRP NFSSGDKTVA  60
DEQEETVIEG ESTGLRLLGL LLQCAECVAM DNLDDATDLL PEISELSSPF GSSPERVGAY  120
FAHALQARVV SSCLRTYSPL DTKSLTLTQS QKIFNALQSY NSISPLVKFS HFTANQAIFQ  180
ALDGQDRVHV IDLDIMQGLQ WPGLFHILAS RSKKIRSMRI TGFGSSSELL ESTGRRLADF  240
ATSLGLPFEF HPLEGKIGNV TDLSQLGVQS SEAVVVHWMH HCLYDITGSD LGTLRLLTLL  300
KPKLITIVEQ DLSHGGSFLG RFVEALHYYS ALFDALGDGL GVDSLERHMV EQQLFGSEIR  360
NIVAVGGPKR TGEVKVERWG EELRRVGFRP VSLGGNPAAQ ASLLLGMFPW KGYTLVEENG  420
CLKLGWKDLS LLTASAWQPS D
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.10.0GRAS family protein