PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO65875

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

FAR1

Protein Properties

Length: 837aa MW: 96228.8 Da PI: 6.9291

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO65875	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	88.2	1.2e-27	75	161	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fY+eYAk++GF++++++s++sk+++e+++++f Cs++g + e++ ++r++++++t+Cka+++vk++ dgkw ++++ +eHnHel p OMO65875 75 FYQEYAKSMGFTTSIKNSRRSKKSKEFIDAKFACSRYGVTPESDVG---SSRRSSVKKTDCKASMHVKRRPDGKWIIHEFIKEHNHELLP 161 9*************************************999877...889999******************************975 PP

Sequence ? help Back to Top
Protein Sequence Length: 837 aa Download sequence
MIMNAISNMV DCRDAMPCSD GVNENMVNVV DETAHSRDGG IVDSSKRAVV GFDGDTEFEP 60 RNGIEFESHE AAYAFYQEYA KSMGFTTSIK NSRRSKKSKE FIDAKFACSR YGVTPESDVG 120 SSRRSSVKKT DCKASMHVKR RPDGKWIIHE FIKEHNHELL PALAYHFRIY RNVKLAEKNN 180 IDILNAVSER TRKMYVEMSR QTGGYQNLSF LQNDIKNQFD KGRHLIVDEG DAQIMLEYFK 240 RIKKENPDFF YAIDLNEEQR LRNLFWVDAK SRNDYSSFND VVSFDTTYMK FNEKLPFAPF 300 VGVNHHSQAM LLGCALLADE TKPTFVWLLK TWLRAMGGQA PKVIITDQDK ALKAAVEEVF 360 PTARHCFALW HILEKVPKSL AHVIGPHENF LPKFNKCIFK SWTDEEFDMR WWKMITRFEL 420 QDDEWVQSLY EDRKKWVPTF MDDVFLAGMS TSQRSESMNV FFDKYIHKKI TLKEFVKQYG 480 AILQNRYEEE TVADFDTWQK QPALKSPSPW EKQMSIVYTH AIFKKFQVEV LGVVGCHPKK 540 ESEDDGTITF RVQDCEKDEN FMLIWNEEKS EVSCSCRSFE YRGFLCRHAL IVLQMCGRTS 600 IPAHYILKRW TKDAKSGQSM AEGTERVQTR VRRYNDLCKQ AIELSEEGSL SEESYNIAFR 660 ALVEALKNCV NVNNSCITAV ESMGHAHGLR EAEEENHGNL ASKSTKKKNT NKKRKGQSEP 720 ALMFVDTQDS LQQMDNLSSD GIALNGYYGA QQNVQGLVQL NLMEPPHEGY YVNQQSMQGL 780 GQLNSMATGH DSFFGTQQSM HGLGQLDYRP SASFSYALQD DPQLRSTQLH GDVSRHP

Sequence ? help Back to Top

Protein Sequence Length: 837 aa Download sequence

MIMNAISNMV DCRDAMPCSD GVNENMVNVV DETAHSRDGG IVDSSKRAVV GFDGDTEFEP  60
RNGIEFESHE AAYAFYQEYA KSMGFTTSIK NSRRSKKSKE FIDAKFACSR YGVTPESDVG  120
SSRRSSVKKT DCKASMHVKR RPDGKWIIHE FIKEHNHELL PALAYHFRIY RNVKLAEKNN  180
IDILNAVSER TRKMYVEMSR QTGGYQNLSF LQNDIKNQFD KGRHLIVDEG DAQIMLEYFK  240
RIKKENPDFF YAIDLNEEQR LRNLFWVDAK SRNDYSSFND VVSFDTTYMK FNEKLPFAPF  300
VGVNHHSQAM LLGCALLADE TKPTFVWLLK TWLRAMGGQA PKVIITDQDK ALKAAVEEVF  360
PTARHCFALW HILEKVPKSL AHVIGPHENF LPKFNKCIFK SWTDEEFDMR WWKMITRFEL  420
QDDEWVQSLY EDRKKWVPTF MDDVFLAGMS TSQRSESMNV FFDKYIHKKI TLKEFVKQYG  480
AILQNRYEEE TVADFDTWQK QPALKSPSPW EKQMSIVYTH AIFKKFQVEV LGVVGCHPKK  540
ESEDDGTITF RVQDCEKDEN FMLIWNEEKS EVSCSCRSFE YRGFLCRHAL IVLQMCGRTS  600
IPAHYILKRW TKDAKSGQSM AEGTERVQTR VRRYNDLCKQ AIELSEEGSL SEESYNIAFR  660
ALVEALKNCV NVNNSCITAV ESMGHAHGLR EAEEENHGNL ASKSTKKKNT NKKRKGQSEP  720
ALMFVDTQDS LQQMDNLSSD GIALNGYYGA QQNVQGLVQL NLMEPPHEGY YVNQQSMQGL  780
GQLNSMATGH DSFFGTQQSM HGLGQLDYRP SASFSYALQD DPQLRSTQLH GDVSRHP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	0.0	FAR1 family protein

Link Out ? help Back to Top
Ensembl	OMO65875