PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO65779
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family M-type_MADS
Protein Properties Length: 118aa    MW: 12991 Da    PI: 10.2444
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO65779genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF39.38.5e-133332050
              HHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
    SRF-TF 20 ilKKAeELSvLCdaevaviifsstgklyeys 50
              + KKA+ELS+LC+a+va++ +s++g+l  y+
  OMO65779  3 LYKKANELSTLCGARVAIVTISEKGELTMYP 33
              78*************************9998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 118 aa     Download sequence    
MNLYKKANEL STLCGARVAI VTISEKGELT MYPNSETVIQ RYLTWKKRTG KSNSAGSSKG  60
LKKLRVKKLQ KGEKKQPVVE AAAAELTQTR DQVLNVAAEE GGTMAVMDLN QDLNSKFD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51860.22e-07MIKC_MADS family protein