PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO64470
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family LBD
Protein Properties Length: 222aa    MW: 24110.3 Da    PI: 8.4009
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO64470genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26091.59.9e-292104198
    DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 
               +C++C+vlr++C++ Cvl+  +     p++q +++ +++k+FG+s +l+l++++pe++r+++++sl++eA+ r+ +Pv+Gavg++++++++l+q++++++l
  OMO64470   2 SCNGCRVLRKGCSETCVLRSSLrwiesPEAQGNATLFLAKFFGRSDLLSLISSVPESQRPALFQSLLFEACGRTVNPVNGAVGLLSSGNWHLCQAAVDTVL 102
               6***********************************************************************************************99887 PP

    DUF260  97 lk 98 
               ++
  OMO64470 103 QG 104
               65 PP
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    
MSCNGCRVLR KGCSETCVLR SSLRWIESPE AQGNATLFLA KFFGRSDLLS LISSVPESQR  60
PALFQSLLFE ACGRTVNPVN GAVGLLSSGN WHLCQAAVDT VLQGGALRPI PGVLAGVWTP  120
SSNESSDRFC ANSCNFQSRY GQSSPLMTMM MMENQSASAA SDLSLSLTTK LGGGRRGTGR  180
RYEEERKRAR VASFYSEESE ITTFASNVNE GSQERKILNL FV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.12e-65LBD family protein