PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO64276
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family ARF
Protein Properties Length: 700aa    MW: 78179 Da    PI: 6.8274
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO64276genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.93.8e-23126226198
               EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
               f k+lt sd++++g +++ +k+a+e+     +++ + +++l  +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD +vF   +++++el+v+v
  OMO64276 126 FSKILTASDTSTHGGFSVLRKHATEClppldMNQATPTQELAAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFL--RDDNGELRVGV 224
               889***************************9555556679************************************************..5589999**** PP

               E- CS
        B3  97 fr 98 
               +r
  OMO64276 225 RR 226
               98 PP
2Auxin_resp106.92.3e-35252331183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 aaha++t+++F v+Y+Pr+  s+F++ v+k+++++++ +svGmRfkm+fe+eds+err++Gt+vgv d++p +W++SkWrsLk
    OMO64276 252 AAHAVTTHTIFVVYYKPRT--SQFIIGVNKYLESINNGFSVGMRFKMRFEGEDSPERRFTGTIVGVGDVSP-HWSESKWRSLK 331
                 79****************6..9*************************************************.*********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 700 aa     Download sequence    
MAPFGRRENL KEKMGVNGDD LYPELWKLCA GPLVEIPRVQ ERVFYFPQGH MEQLEASTNQ  60
ELNHQAPLFN LPSKILCRVL HVQLLAEQET DEVYAQITLQ PELDQSEPTS PDPCPTEAPK  120
RTVHSFSKIL TASDTSTHGG FSVLRKHATE CLPPLDMNQA TPTQELAAKD LHGYEWRFKH  180
IFRGQPRRHL LTTGWSTFVT SKRLVAGDAF VFLRDDNGEL RVGVRRLARQ QSTMPSSVIS  240
SQSMHLGVLA TAAHAVTTHT IFVVYYKPRT SQFIIGVNKY LESINNGFSV GMRFKMRFEG  300
EDSPERRFTG TIVGVGDVSP HWSESKWRSL KIQWDEPATI QRPERVSPWE IEPFVASASI  360
NLAQPAVKSK RPRPVDIPAS EITTNSAGSA FWCRGSTQSH ELTQVGSTIE VQSNESQVMW  420
PMRQKEMDSS LVNGNYNSRT RPENAWPPSS HVNVSLNLFH DSMDDNNKTG TPRTVLTGYA  480
SSVQARPSND VLHDQVEKGN KTETSTGCRL FGFNLTDSTG AAGPSDKEQA STTVDYNRVK  540
GSIPAASDFD QNPETSKASK EQKQVVSETS NKEMQGKQGA TTSMRSRTKV HMQGIAVGRA  600
VDLTVLKGYD NLINELENMF DIKGELCPRG KWAVVFTDNE GDMMLVGDDP WVEFCKMVRK  660
IFIYSNEEVK KMSARCKFPV SSLEGEGTVV SLDSEHKSET
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1370374KRPRP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.10.0ARF family protein