PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO64265
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family LBD
Protein Properties Length: 203aa    MW: 22849.3 Da    PI: 5.3182
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO64265genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260123.21.4e-38141131100
    DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100
               +CaaC++lrr+C ++Cvlapyfp ++  kfa vhk+FGasnv+k+++ ++e++reda+++lvyeA ar+rdPvyG+ + i++lq+ +++l+ +l+++k++
  OMO64265  14 PCAACRMLRRRCDSNCVLAPYFPGDEIDKFAGVHKVFGASNVIKMIQMVEEKNREDAVKALVYEATARIRDPVYGSSRAIFQLQKMVQELRMQLESTKAQ 113
               7**********************************************************************************************99987 PP

Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    
MGLEAQARSR THQPCAACRM LRRRCDSNCV LAPYFPGDEI DKFAGVHKVF GASNVIKMIQ  60
MVEEKNREDA VKALVYEATA RIRDPVYGSS RAIFQLQKMV QELRMQLEST KAQVLELQQQ  120
KDQLLGILLN VNHLDLLSPV DGASLSLDYD DSMANDPIKF PVQYGLTILA HEAAYGVAIY  180
SDPSERIAHM IEEDWIGIDI LRL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28500.11e-42LBD family protein