PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMO64265 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
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Family | LBD | ||||||||
Protein Properties | Length: 203aa MW: 22849.3 Da PI: 5.3182 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 123.2 | 1.4e-38 | 14 | 113 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +CaaC++lrr+C ++Cvlapyfp ++ kfa vhk+FGasnv+k+++ ++e++reda+++lvyeA ar+rdPvyG+ + i++lq+ +++l+ +l+++k++ OMO64265 14 PCAACRMLRRRCDSNCVLAPYFPGDEIDKFAGVHKVFGASNVIKMIQMVEEKNREDAVKALVYEATARIRDPVYGSSRAIFQLQKMVQELRMQLESTKAQ 113 7**********************************************************************************************99987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence |
MGLEAQARSR THQPCAACRM LRRRCDSNCV LAPYFPGDEI DKFAGVHKVF GASNVIKMIQ 60 MVEEKNREDA VKALVYEATA RIRDPVYGSS RAIFQLQKMV QELRMQLEST KAQVLELQQQ 120 KDQLLGILLN VNHLDLLSPV DGASLSLDYD DSMANDPIKF PVQYGLTILA HEAAYGVAIY 180 SDPSERIAHM IEEDWIGIDI LRL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28500.1 | 1e-42 | LBD family protein |
Link Out ? help Back to Top | |
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Ensembl | OMO64265 |