PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO64179

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

NAC

Protein Properties

Length: 1160aa MW: 130538 Da PI: 5.1075

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO64179	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	114.9	8.5e-36	63	186	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvg 101 Gf F P de +++++L +k+ g+++ + ++i evd++k ePwdLp+ kv+++ ew+fF k +k + + +++r+t++gyWk+tg+d+ +++ + +++g OMO64179 63 IGFGFLPPDEVIISHFLLNKMIGNHHLT-HHIGEVDLLKQEPWDLPAlsKVESRYPEWFFFYKLNKIS--QGKTERITEAGYWKSTGQDRVIKD-GARVIG 159 69*******************99666.88***********5346666667**998865..4699**************99.999* PP NAM 102 lkktLvfykgrapkgektdWvmheyrl 128 kktLvfykgr+p+g+k++Wv+heyr+ OMO64179 160 SKKTLVFYKGRTPRGVKSEWVIHEYRA 186 *************************96 PP
2	NAM	108.5	8.2e-34	620	741	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikev..diykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 +G+rFhPtd+elv++yL +k+ +++ + ++i +v di+++eP++L +++++ wy F++r++ +r nr+tk gyWk tgk++++++ + OMO64179 620 VGYRFHPTDKELVDHYLWNKALDRDSAV-QAIGDVhgDICDWEPEELTrFsVQRSNDQVWYLFCQRNQC----RRVNRTTKLGYWKLTGKHRRIKA--NVG 713 7**********************888.789998889*****8543344577799*9885....59***************99..778 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 +g+kktLvfy+gr pkg+ t Wv+hey+l OMO64179 714 IGTKKTLVFYQGR-PKGKWTPWVIHEYNL 741 ******765.789********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1160 aa Download sequence
MFMIAAYLLH DGSARGFGSS GLRVIRVSGH LGCESFGSRV RRLSGRVGSV VYFFWSNRVG 60 RVIGFGFLPP DEVIISHFLL NKMIGNHHLT HHIGEVDLLK QEPWDLPALS KVESRYPEWF 120 FFYKLNKISQ GKTERITEAG YWKSTGQDRV IKDGARVIGS KKTLVFYKGR TPRGVKSEWV 180 IHEYRATPAS IPPNAENNYV VGVLRRKVPE KPENATSNSG LSSSHLTNSS SQSNSVGVAP 240 METPPQLQPN NMGYSEDYDF ALAMQTQMES EGIPWHEFGL FECDLPPSSG TAKNGLVPME 300 EDVLSLEDLP SPDGLIDNEE DELPNHFNDN TTEQEMVFMR YTFPFQDKYP YEGTHGSSLL 360 SVSDYSTLDH AENNILYDCV LSMSDGISHG YSEGYNQNRL ENEFHHDDIL IMDSTVDSAT 420 MTTHRINDLE LPKEERSVKP KSHKSVVQGH PVMYELQSGK LEPNDLELLK EEWSVVNSRT 480 FKSHKPVEQG HPEGVQYILQ SGNDMTWTGE RRAVVEHVRN RKSTVQSNKD RKVDNGRRNA 540 KSDLNSRFNG SAGSSRKNTF NVVETSQPRC KCTPKPPLVY VGNVLLGVIL VIFIIREVML 600 QMFEVFQDWR DECCCCNDTV GYRFHPTDKE LVDHYLWNKA LDRDSAVQAI GDVHGDICDW 660 EPEELTRFSV QRSNDQVWYL FCQRNQCRRV NRTTKLGYWK LTGKHRRIKA NVGIGTKKTL 720 VFYQGRPKGK WTPWVIHEYN LPDTLPNQKG IFLCKLKRKH DEKAGLLSGE EDQPSNVEDD 780 NDSNNSMKIN VNDLLTELDE TNGSDEVASA QKPQMSGEEA PPCNAALSSY NFNGNFDGVQ 840 NQSSTNEHDD ELHSSTLLPD MHGEHVPCCD NSSVFCGFNG NFDGVQNQSS TNEQDDELHS 900 STLLPYMHGE HVPSCDNSSV FCGFNDGFDG VQNQSSANEE DDELHSSTLL PHMQAEHVPS 960 CDNSSNFSGF NDDFDGVQNQ SSANEEDDEF WNNLLVDEND AYPDEGSNQL VVGVESSGLL 1020 AGNLEESSRK RLRVDDSGLD GVTETEVSQA RYGKELSISS MFVLTDSNKF LEISLVEATN 1080 VTLFAMDHNL LASERRLGIL NESRKGSAPP FDYAADVPVA TRIYKPHNQR KAHNRKMNEP 1140 SVKGISMQRN KEGIYPLNTR

Sequence ? help Back to Top

Protein Sequence Length: 1160 aa Download sequence

MFMIAAYLLH DGSARGFGSS GLRVIRVSGH LGCESFGSRV RRLSGRVGSV VYFFWSNRVG  60
RVIGFGFLPP DEVIISHFLL NKMIGNHHLT HHIGEVDLLK QEPWDLPALS KVESRYPEWF  120
FFYKLNKISQ GKTERITEAG YWKSTGQDRV IKDGARVIGS KKTLVFYKGR TPRGVKSEWV  180
IHEYRATPAS IPPNAENNYV VGVLRRKVPE KPENATSNSG LSSSHLTNSS SQSNSVGVAP  240
METPPQLQPN NMGYSEDYDF ALAMQTQMES EGIPWHEFGL FECDLPPSSG TAKNGLVPME  300
EDVLSLEDLP SPDGLIDNEE DELPNHFNDN TTEQEMVFMR YTFPFQDKYP YEGTHGSSLL  360
SVSDYSTLDH AENNILYDCV LSMSDGISHG YSEGYNQNRL ENEFHHDDIL IMDSTVDSAT  420
MTTHRINDLE LPKEERSVKP KSHKSVVQGH PVMYELQSGK LEPNDLELLK EEWSVVNSRT  480
FKSHKPVEQG HPEGVQYILQ SGNDMTWTGE RRAVVEHVRN RKSTVQSNKD RKVDNGRRNA  540
KSDLNSRFNG SAGSSRKNTF NVVETSQPRC KCTPKPPLVY VGNVLLGVIL VIFIIREVML  600
QMFEVFQDWR DECCCCNDTV GYRFHPTDKE LVDHYLWNKA LDRDSAVQAI GDVHGDICDW  660
EPEELTRFSV QRSNDQVWYL FCQRNQCRRV NRTTKLGYWK LTGKHRRIKA NVGIGTKKTL  720
VFYQGRPKGK WTPWVIHEYN LPDTLPNQKG IFLCKLKRKH DEKAGLLSGE EDQPSNVEDD  780
NDSNNSMKIN VNDLLTELDE TNGSDEVASA QKPQMSGEEA PPCNAALSSY NFNGNFDGVQ  840
NQSSTNEHDD ELHSSTLLPD MHGEHVPCCD NSSVFCGFNG NFDGVQNQSS TNEQDDELHS  900
STLLPYMHGE HVPSCDNSSV FCGFNDGFDG VQNQSSANEE DDELHSSTLL PHMQAEHVPS  960
CDNSSNFSGF NDDFDGVQNQ SSANEEDDEF WNNLLVDEND AYPDEGSNQL VVGVESSGLL  1020
AGNLEESSRK RLRVDDSGLD GVTETEVSQA RYGKELSISS MFVLTDSNKF LEISLVEATN  1080
VTLFAMDHNL LASERRLGIL NESRKGSAPP FDYAADVPVA TRIYKPHNQR KAHNRKMNEP  1140
SVKGISMQRN KEGIYPLNTR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35580.3	1e-34	NAC family protein

Link Out ? help Back to Top
Ensembl	OMO64179