PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO64133

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

WRKY

Protein Properties

Length: 517aa MW: 55620.9 Da PI: 7.2869

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO64133	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	98	5.9e-31	266	324	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed++++++tYeg+Hnh+ OMO64133 266 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCAEDKSILITTYEGNHNHP 324 7*********************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 517 aa Download sequence
MEKQQQHRRE LTFLHSGDFL RQNSAVSDDS TDRVKPPIIK EMDFFSSNNN QSHDHDHHHR 60 HHQQEQESKI NNGRSSSLFD SGVNTGLNLL SSTPGVSKNT TNEDKQSAEM SALKIELERL 120 HEENRRLRSM LDQITKSYTE LQGQLFMAVQ KQAAAPGNQG EQKEKVNGMV SLQQLMDPRP 180 SGALDANEAS ASDDRTQELS ISPANTTEHV SAHDQDGAAD QTSQSWGSPK SPKLDQSKIN 240 EDQASEVPFR KARVSVRARS EAPMISDGCQ WRKYGQKMAK GNPCPRAYYR CTMAVGCPVR 300 KQVQRCAEDK SILITTYEGN HNHPLPPAAT AMANTTSAAA AMLLSGSTTS KDGLGLPTSG 360 YFPSLPYAST MATLSASAPF PTITLDLTQG PNAVPFLRPP PPAATFPLPL HGYPQLLGHP 420 MFAAHKLSAL PAMQLGQRPP ASSMVETVTA AITSDPNFTA ALAAAISSIM ASPTNTNGNT 480 INNNGGSTGN NNSSNGVPAA IPGSPQLPQS CTTFSTN

Sequence ? help Back to Top

Protein Sequence Length: 517 aa Download sequence

MEKQQQHRRE LTFLHSGDFL RQNSAVSDDS TDRVKPPIIK EMDFFSSNNN QSHDHDHHHR  60
HHQQEQESKI NNGRSSSLFD SGVNTGLNLL SSTPGVSKNT TNEDKQSAEM SALKIELERL  120
HEENRRLRSM LDQITKSYTE LQGQLFMAVQ KQAAAPGNQG EQKEKVNGMV SLQQLMDPRP  180
SGALDANEAS ASDDRTQELS ISPANTTEHV SAHDQDGAAD QTSQSWGSPK SPKLDQSKIN  240
EDQASEVPFR KARVSVRARS EAPMISDGCQ WRKYGQKMAK GNPCPRAYYR CTMAVGCPVR  300
KQVQRCAEDK SILITTYEGN HNHPLPPAAT AMANTTSAAA AMLLSGSTTS KDGLGLPTSG  360
YFPSLPYAST MATLSASAPF PTITLDLTQG PNAVPFLRPP PPAATFPLPL HGYPQLLGHP  420
MFAAHKLSAL PAMQLGQRPP ASSMVETVTA AITSDPNFTA ALAAAISSIM ASPTNTNGNT  480
INNNGGSTGN NNSSNGVPAA IPGSPQLPQS CTTFSTN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01720.1	6e-89	WRKY family protein

Link Out ? help Back to Top
Ensembl	OMO64133