PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO64048

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

MYB_related

Protein Properties

Length: 663aa MW: 74229.2 Da PI: 8.3389

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO64048	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.1	3.5e-07	129	171	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 WT+eE ++l d++++ + + Ia ++++ Rt +++k+r+++ OMO64048 129 TWTKEETDQLFDLCERCDLR-FIIIADRFPTSRTVEELKDRYYS 171 7*****************.*******************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 663 aa Download sequence
MDAKDILGLP KTPLPITQEK KSRPQKDSQR KPDGISREVY ALTGGLAPLM PSIDVSQLKR 60 RPPSDEKITW QWLPFTSSAR KDNLQLYHWV RVVNGVPPTG DYSFAKYNKS VDVIKYTDEE 120 YEKYLTDPTW TKEETDQLFD LCERCDLRFI IIADRFPTSR TVEELKDRYY SVSRAILIAR 180 APSPADVAGH PLVKDPYNAS QETERKRALS MVLSQTKHQE RKDAEVLAEA KRIAESRMAA 240 RVAEEPDLPV PSDAAPENTE KAIVHGDTIS QSNVQVSSAA VAPSSSIMPD NASTLASLRM 300 LRVYLRTYGL EQMVQAASSS AGLRTIKRVE QTLQDLGVNL KPKVPTKAVC AEHLELRKEI 360 LTLLNLQKQL QYKEAEGSSF RDGSYGDMPG TPKRMHRAAD QDRTFVPDAI SFGGDRVGKR 420 EQKRKAGFDY LARFRDQTHG MAAHIMNLIR KKSRTSLRSS WPSISLSLFA SGFVLGPLID 480 GLHSRVDLVV YQNGAINIGP LHTNIWVPPL LGLFYCTVGL LQLFLDERAS SDVPQGSLEK 540 AAASLIALVL FIELSAEMYK NGVPDNIEAY ILFAAAELLW FTLDRTRLGF ALASLVGICC 600 PLAEIPLMKF FNLWYYPQAN VEIFGQGLVT WTVTCYFAYI PFLICLSRWL QSIINAADTE 660 KST

Sequence ? help Back to Top

Protein Sequence Length: 663 aa Download sequence

MDAKDILGLP KTPLPITQEK KSRPQKDSQR KPDGISREVY ALTGGLAPLM PSIDVSQLKR  60
RPPSDEKITW QWLPFTSSAR KDNLQLYHWV RVVNGVPPTG DYSFAKYNKS VDVIKYTDEE  120
YEKYLTDPTW TKEETDQLFD LCERCDLRFI IIADRFPTSR TVEELKDRYY SVSRAILIAR  180
APSPADVAGH PLVKDPYNAS QETERKRALS MVLSQTKHQE RKDAEVLAEA KRIAESRMAA  240
RVAEEPDLPV PSDAAPENTE KAIVHGDTIS QSNVQVSSAA VAPSSSIMPD NASTLASLRM  300
LRVYLRTYGL EQMVQAASSS AGLRTIKRVE QTLQDLGVNL KPKVPTKAVC AEHLELRKEI  360
LTLLNLQKQL QYKEAEGSSF RDGSYGDMPG TPKRMHRAAD QDRTFVPDAI SFGGDRVGKR  420
EQKRKAGFDY LARFRDQTHG MAAHIMNLIR KKSRTSLRSS WPSISLSLFA SGFVLGPLID  480
GLHSRVDLVV YQNGAINIGP LHTNIWVPPL LGLFYCTVGL LQLFLDERAS SDVPQGSLEK  540
AAASLIALVL FIELSAEMYK NGVPDNIEAY ILFAAAELLW FTLDRTRLGF ALASLVGICC  600
PLAEIPLMKF FNLWYYPQAN VEIFGQGLVT WTVTCYFAYI PFLICLSRWL QSIINAADTE  660
KST

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47210.1	0.0	MYB_related family protein

Link Out ? help Back to Top
Ensembl	OMO64048