PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO64005

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

GRAS

Protein Properties

Length: 1755aa MW: 196880 Da PI: 6.945

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO64005	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	266.1	1.2e-81	483	847	1	362
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalkl....fsevsPilkfshl 96 lv+lLl++Ae v +++e+a++lL+r + +as++g+++qR++ yf+eAL++r+ + ++ +++ + + t+ n++++ +++ ++ P+l++ h+ OMO64005 483 LVHLLLAAAEKVGYEQFERASRLLSRCEWIASERGSTVQRIVYYFAEALRERIDKaTGRNIM-VTKLQGTKLCNEIDHGLGTNVtsvkCYQQLPFLQVMHF 582 68***************************************************3333333.333333333333333333333344666778**** PP GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196 t qaI e v++++++H+iDf+i G+QW LlqaLa+R+ + l+iT+v+ sg+++ etg+rL+++A++l++pf+fnv+++++++dl+ e +++ OMO64005 583 TGVQAIIENVASASKIHVIDFQIRSGVQWTGLLQALAEREqRRVELLKITAVEF--SGNRKLAAETGKRLESVAASLNLPFSFNVIYVQDVKDLKEELFNI 681 ************************************555669****..779999*********************************** PP GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnv 297 +++E+laVn+ l l ++ +++ +le +++++k+l+P ++vv+e ea+hns+sF+ rf+eal +ysa+fd+l+++++++ e r+++E + l + i+++ OMO64005 682 RSDESLAVNFPLVLRTMISRPSCLEI----LMRVIKNLNPVIMVVIEVEANHNSPSFVGRFIEALFFYSAFFDCLDTSMAEDVELRTSIESV-LFNGIRSI 777 **************99999999....*********************************************************9.7789 PP GRAS 298 vacegaerrerhetlekWre.....rleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW 362 va+eg+er+ r ++e W++ r+ e GFk+ + ++ ++ l+ ++ k++ +v ++s+ vl+W OMO64005 778 VAMEGEERITRSVKMEVWSAffarfRMVELGFKTTRPWARVKSKEGLIPKMEKGQAGHVTDNSHVSVLCW 847 **************8733333666788888888887777777777777788899999999**** PP

Sequence ? help Back to Top
Protein Sequence Length: 1755 aa Download sequence
MGFKNLYQKA RKFVTSPTLK QSFHLLTVTL LSLLLPLAFL LVARLSCVNY ILTITSDSQP 60 SPSNYFLFSF QFYTNPAVLY VLISAVSIAT LVHGLTGKIT FVSESPEATY RPHLYIAWIV 120 LCVLQVSVGL GIEGSIATGI DGAAFGVERS LLSRVIFFLG LHEIMLLWFR TVVKPLVDDT 180 IFGGATEERW VHRAAMALSV GTFWWWKLRD EVESLVVVAE AKKELSMEIE MADFLGWWLY 240 YLTVTIGMVR VVKALIWLGI VMLCKRVRRN RADHENIEIT TSELEVIQDK DYGKEAAAMF 300 KGKQDHLFGI QEFAEGREND PIFTEYGIYQ ENNVAKKSED QGNQQRQGMG QGTKLDYLEE 360 FNFSSVFSTN LAFQEFQRQD KSHQEPVKPP IPSSLQFSSL ELLSNYGNSF KKLKLGKSNT 420 TGEDQTNGRG RGKKLSPEET MRVAGARYVQ FSDQRYDDFS MVMHPFGHAL SGLSDDETKD 480 VELVHLLLAA AEKVGYEQFE RASRLLSRCE WIASERGSTV QRIVYYFAEA LRERIDKATG 540 RNIMVTKLQG TKLCNEIDHG LGTNVTSVKC YQQLPFLQVM HFTGVQAIIE NVASASKIHV 600 IDFQIRSGVQ WTGLLQALAE REQRRVELLK ITAVEFSGNR KLAAETGKRL ESVAASLNLP 660 FSFNVIYVQD VKDLKEELFN IRSDESLAVN FPLVLRTMIS RPSCLEILMR VIKNLNPVIM 720 VVIEVEANHN SPSFVGRFIE ALFFYSAFFD CLDTSMAEDV ELRTSIESVL FNGIRSIVAM 780 EGEERITRSV KMEVWSAFFA RFRMVELGFK TTRPWARVKS KEGLIPKMEK GQAGHVTDNS 840 HVSVLCWVSF SSDSSLCLMR VAKQSRAAPI LVTMVSKASD SSSKSRKSHG DNSAGGMGNL 900 TYNLNQLKRQ IQAERTASVK EKVEKNRKKL ESHISEILSA TSSRSILSEE EHGFGKMLSS 960 RIEVPLCRYT GIAQVLGDRD HAHGHEVVSS TSVKLPCIEK LPPYTTWIFL DKNQRMADDQ 1020 SVVGRRRIYY DQHGSEALIC SDSEEDIAEP EEEKHDFTEG EDRIIWSISQ EFGLGDEILQ 1080 AVSQFIGVGI SEIQERHSTL TEKYSDQNVN DSEDSGSEKG ISLEKSLSDA LDSFDNLFCR 1140 RCLLFDCRLH GCSQTLINPS EKQPYWSEYE DDRKPCSDQC YLRLRAVKDG TEGSGFNGLH 1200 VVKTASLEEK DHVTSSNAKE PNTDVGADLM HEERDISEEA TPVTLECTPR SESAAEAQNL 1260 DISSLSTIDN HESSGKRKAY QEGNAPLDGS TYCSDGIQDL VSKKQKTVLA LDEAKKSSEA 1320 ASSDDHTPSS ISRNHNVGAL KENEGQVTDG TQSENSACPA IGSGDKTEDN IRCGAKDVRE 1380 VPDLKCSSSE WRPIERELYL KGVEIFGRNS CLIARNLLSG LKTCREVSSY MFDAGASTLH 1440 RSNMTSSFLE ENGKSETDYM EQEISTRPRL LRRRGRTRKL KYSWKSAGHP SIWKRIADGK 1500 NQSCKQYTPC GCQPMCGKQC PCLHNGTCCE KYCGCSKSCK NRFRGCHCAK SQCRSRQCPC 1560 FAAGRECDPD VCRNCWVSCG GGSMGEPPKR GDGQCGNMRL LLRQQQRILL AKSDVAGWGA 1620 FLKNSVNKND YLGEYTGELI SHREADKRGK IYDRANSSFL FDLNDQYVLD AYRKGDKLKF 1680 ANHSSNPNCY AKVMLVAGDH RVGIFAKERI EASEELFYDY RYGPDQAPAW ARKPEGSKRD 1740 DASVSQGRAK KHQSH

Sequence ? help Back to Top

Protein Sequence Length: 1755 aa Download sequence

MGFKNLYQKA RKFVTSPTLK QSFHLLTVTL LSLLLPLAFL LVARLSCVNY ILTITSDSQP  60
SPSNYFLFSF QFYTNPAVLY VLISAVSIAT LVHGLTGKIT FVSESPEATY RPHLYIAWIV  120
LCVLQVSVGL GIEGSIATGI DGAAFGVERS LLSRVIFFLG LHEIMLLWFR TVVKPLVDDT  180
IFGGATEERW VHRAAMALSV GTFWWWKLRD EVESLVVVAE AKKELSMEIE MADFLGWWLY  240
YLTVTIGMVR VVKALIWLGI VMLCKRVRRN RADHENIEIT TSELEVIQDK DYGKEAAAMF  300
KGKQDHLFGI QEFAEGREND PIFTEYGIYQ ENNVAKKSED QGNQQRQGMG QGTKLDYLEE  360
FNFSSVFSTN LAFQEFQRQD KSHQEPVKPP IPSSLQFSSL ELLSNYGNSF KKLKLGKSNT  420
TGEDQTNGRG RGKKLSPEET MRVAGARYVQ FSDQRYDDFS MVMHPFGHAL SGLSDDETKD  480
VELVHLLLAA AEKVGYEQFE RASRLLSRCE WIASERGSTV QRIVYYFAEA LRERIDKATG  540
RNIMVTKLQG TKLCNEIDHG LGTNVTSVKC YQQLPFLQVM HFTGVQAIIE NVASASKIHV  600
IDFQIRSGVQ WTGLLQALAE REQRRVELLK ITAVEFSGNR KLAAETGKRL ESVAASLNLP  660
FSFNVIYVQD VKDLKEELFN IRSDESLAVN FPLVLRTMIS RPSCLEILMR VIKNLNPVIM  720
VVIEVEANHN SPSFVGRFIE ALFFYSAFFD CLDTSMAEDV ELRTSIESVL FNGIRSIVAM  780
EGEERITRSV KMEVWSAFFA RFRMVELGFK TTRPWARVKS KEGLIPKMEK GQAGHVTDNS  840
HVSVLCWVSF SSDSSLCLMR VAKQSRAAPI LVTMVSKASD SSSKSRKSHG DNSAGGMGNL  900
TYNLNQLKRQ IQAERTASVK EKVEKNRKKL ESHISEILSA TSSRSILSEE EHGFGKMLSS  960
RIEVPLCRYT GIAQVLGDRD HAHGHEVVSS TSVKLPCIEK LPPYTTWIFL DKNQRMADDQ  1020
SVVGRRRIYY DQHGSEALIC SDSEEDIAEP EEEKHDFTEG EDRIIWSISQ EFGLGDEILQ  1080
AVSQFIGVGI SEIQERHSTL TEKYSDQNVN DSEDSGSEKG ISLEKSLSDA LDSFDNLFCR  1140
RCLLFDCRLH GCSQTLINPS EKQPYWSEYE DDRKPCSDQC YLRLRAVKDG TEGSGFNGLH  1200
VVKTASLEEK DHVTSSNAKE PNTDVGADLM HEERDISEEA TPVTLECTPR SESAAEAQNL  1260
DISSLSTIDN HESSGKRKAY QEGNAPLDGS TYCSDGIQDL VSKKQKTVLA LDEAKKSSEA  1320
ASSDDHTPSS ISRNHNVGAL KENEGQVTDG TQSENSACPA IGSGDKTEDN IRCGAKDVRE  1380
VPDLKCSSSE WRPIERELYL KGVEIFGRNS CLIARNLLSG LKTCREVSSY MFDAGASTLH  1440
RSNMTSSFLE ENGKSETDYM EQEISTRPRL LRRRGRTRKL KYSWKSAGHP SIWKRIADGK  1500
NQSCKQYTPC GCQPMCGKQC PCLHNGTCCE KYCGCSKSCK NRFRGCHCAK SQCRSRQCPC  1560
FAAGRECDPD VCRNCWVSCG GGSMGEPPKR GDGQCGNMRL LLRQQQRILL AKSDVAGWGA  1620
FLKNSVNKND YLGEYTGELI SHREADKRGK IYDRANSSFL FDLNDQYVLD AYRKGDKLKF  1680
ANHSSNPNCY AKVMLVAGDH RVGIFAKERI EASEELFYDY RYGPDQAPAW ARKPEGSKRD  1740
DASVSQGRAK KHQSH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1471	1477	LRRRGRT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66350.1	1e-45	GRAS family protein

Link Out ? help Back to Top
Ensembl	OMO64005