PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO63931

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

GATA

Protein Properties

Length: 491aa MW: 55590.2 Da PI: 8.4641

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO63931	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	58.5	9.2e-19	397	430	1	34
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C+ C+tt TplWR gp g+++LCnaCG++yrkk+ OMO63931 397 CVDCNTTRTPLWRGGPAGPRSLCNACGIRYRKKK 430 ********************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 491 aa Download sequence
MKSQASCVDE DDGESLAYFW WKTAAKSDEC AKLNKLDFPD VSILTPRLRL FRELERLAVI 60 APNGLNELRH KLIGYRSGDF WVPTGGINKE DMNIPPVNTI LLVGFSGSGK SSLINLMYSI 120 LGRSGLIPFA QTSSGSRSNY TTMYMEEHNV LRSLRSGFCV FDSRGFDYGN TREALEELSS 180 WMSEGIHHNQ PCLRYGDCIP MSDDVDNDVM RPSSKFVQRR VNCVMFVANI AEIYKALKAG 240 DIKPLEATRQ LFCSPALRKS NENPLLILTH GDLLTAEERI DGRLKICEYL DISETNGVYD 300 IVCLTEYGFL VEDFDPVSAY ALTEAVYRAL LISDRGHFPK RKFQDWALLI LLWIMRFMGL 360 CFAVLADIFS KLGHKHKLKI NMDILQQSGF KEVNRRCVDC NTTRTPLWRG GPAGPRSLCN 420 ACGIRYRKKK KALLGLNRES RIEKSKSEPK VLGREMGLHR IVGKQEWKSK LREEEQAAFL 480 LMALSCGSVY A

Sequence ? help Back to Top

Protein Sequence Length: 491 aa Download sequence

MKSQASCVDE DDGESLAYFW WKTAAKSDEC AKLNKLDFPD VSILTPRLRL FRELERLAVI  60
APNGLNELRH KLIGYRSGDF WVPTGGINKE DMNIPPVNTI LLVGFSGSGK SSLINLMYSI  120
LGRSGLIPFA QTSSGSRSNY TTMYMEEHNV LRSLRSGFCV FDSRGFDYGN TREALEELSS  180
WMSEGIHHNQ PCLRYGDCIP MSDDVDNDVM RPSSKFVQRR VNCVMFVANI AEIYKALKAG  240
DIKPLEATRQ LFCSPALRKS NENPLLILTH GDLLTAEERI DGRLKICEYL DISETNGVYD  300
IVCLTEYGFL VEDFDPVSAY ALTEAVYRAL LISDRGHFPK RKFQDWALLI LLWIMRFMGL  360
CFAVLADIFS KLGHKHKLKI NMDILQQSGF KEVNRRCVDC NTTRTPLWRG GPAGPRSLCN  420
ACGIRYRKKK KALLGLNRES RIEKSKSEPK VLGREMGLHR IVGKQEWKSK LREEEQAAFL  480
LMALSCGSVY A

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06740.1	2e-26	GATA family protein

Link Out ? help Back to Top
Ensembl	OMO63931