PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO63918

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

ARR-B

Protein Properties

Length: 461aa MW: 51738.7 Da PI: 5.2319

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO63918	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	66.7	3.9e-21	240	298	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkg....LtlehvkSHLQkYRl 55 k r+ Wt+eLH+ F+ a++qLGG ++ +Pk+ile mk +t++++ SHLQkYR+ OMO63918 240 KRRMIWTKELHNLFIAAINQLGGLDQSVPKKILERMKAMNpniyITRANIGSHLQKYRI 298 68******************************99976444459***********7 PP
2	Myb_DNA-binding	26.2	1.9e-08	242	297	1	48
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.....TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg.....kgRtlkqcksrwqkyl 48 r+ WT+e++ l++ a++qlGg +k+I ++m t+ ++ s++qky+ OMO63918 242 RMIWTKELHNLFIAAINQLGGLdqsVPKKILERMKamnpnIYITRANIGSHLQKYR 297 567***************88***********999885578899999999997 PP
3	Response_reg	78.2	2.9e-26	35	142	1	108
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 +livdD+++ + +l+++l+k y +v+ ++ +++al++l++ + +D++++D+ mp+mdG++ll+ ir+e +lp++++++ +e+ + + + Ga OMO63918 35 ILIVDDDRTCLLVLERMLRKLLY-QVTKCQLASDALAMLRADKsrFDIVICDLHMPDMDGFKLLEIIRSEM-DLPVVMMSSDDEKGVVMRGIIHGAC 129 8********************.9*********9776666******************9976.********************* PP EEEESS--HHHHH CS Response_reg 96 dflsKpfdpeelv 108 d+l+Kp+ +e+++ OMO63918 130 DYLVKPIRIEAIR 142 ******99885 PP

Sequence ? help Back to Top
Protein Sequence Length: 461 aa Download sequence
MNGNKIIQKS SILKNSLVDN GSSSSFGGFP AGLKILIVDD DRTCLLVLER MLRKLLYQVT 60 KCQLASDALA MLRADKSRFD IVICDLHMPD MDGFKLLEII RSEMDLPVVM MSSDDEKGVV 120 MRGIIHGACD YLVKPIRIEA IRFIWQHVVR RKKCSLEELE QKLNNDVNRD RLLLAEQVFD 180 AAPHNANSDR LLLEEQVFDA AADHQMSNGE SLKLQDQEDG DEDDNGGESY SDGEGTTPKK 240 RRMIWTKELH NLFIAAINQL GGLDQSVPKK ILERMKAMNP NIYITRANIG SHLQKYRINL 300 RKLAQPSADH NKNIYVNALF EHAASSFRQE SYREAQPISH PQLALQNLIA PQSTRFEPKN 360 ETVAAAAAAS TSDNGIAGSD YQSLISELSL PAEFSLHGLS RANSLQQYDF PGAVPIYNDE 420 HLFRSVGNFT DLLSETFPTV DDLILEPSFP VSQYDLESIF R

Sequence ? help Back to Top

Protein Sequence Length: 461 aa Download sequence

MNGNKIIQKS SILKNSLVDN GSSSSFGGFP AGLKILIVDD DRTCLLVLER MLRKLLYQVT  60
KCQLASDALA MLRADKSRFD IVICDLHMPD MDGFKLLEII RSEMDLPVVM MSSDDEKGVV  120
MRGIIHGACD YLVKPIRIEA IRFIWQHVVR RKKCSLEELE QKLNNDVNRD RLLLAEQVFD  180
AAPHNANSDR LLLEEQVFDA AADHQMSNGE SLKLQDQEDG DEDDNGGESY SDGEGTTPKK  240
RRMIWTKELH NLFIAAINQL GGLDQSVPKK ILERMKAMNP NIYITRANIG SHLQKYRINL  300
RKLAQPSADH NKNIYVNALF EHAASSFRQE SYREAQPISH PQLALQNLIA PQSTRFEPKN  360
ETVAAAAAAS TSDNGIAGSD YQSLISELSL PAEFSLHGLS RANSLQQYDF PGAVPIYNDE  420
HLFRSVGNFT DLLSETFPTV DDLILEPSFP VSQYDLESIF R

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16110.1	2e-66	ARR-B family protein

Link Out ? help Back to Top
Ensembl	OMO63918