PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO63760

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

C2H2

Protein Properties

Length: 560aa MW: 60837.9 Da PI: 8.3119

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO63760	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17	1.6e-05	83	105	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H OMO63760 83 FVCEICNKGFQRDQNLQLHRRGH 105 89*******************88 PP
2	zf-C2H2	15.4	5.2e-05	159	181	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H++t+ OMO63760 159 WKCDKCSKKYAVQSDWKAHQKTC 181 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 560 aa Download sequence
MSNISGDDGS FSSGNTGEEV QQLDQKQQKQ LLLQASSASG PSAASNSNGS SSQHPQQPAH 60 ACQDPNAEVI ALSPTTLMAT NRFVCEICNK GFQRDQNLQL HRRGHNLPWK LRQRTTTEVR 120 KRVYICPEPT CVHHNPARAL GDLTGIKKHF SRKHGEKKWK CDKCSKKYAV QSDWKAHQKT 180 CGTREYKCDC GTIFSRRDSF ITHRAFCDAL AEENNKVNQG LINNMGSNLQ NQMPDLMSSM 240 PMSNAINTSM GISDFNNFDP KNPLKSLPQE LVPIPFKSMN MGGGGMFSSS SGTLFGAPRN 300 VSTASSSLQL SSNSSSGFNY LQDGKNGTCQ IAGSPQMSAT ALLQKAAQMG ATASNSINSP 360 MMQKSFASSM AGPNFAGIHQ QQNTNSYDHF QSQTDQSSMV GISEGGFSNP LMPKSPNEMA 420 QLFNAATGSS SAMNDMGIFT NMFMNGVDNR NQGLMKNMEH EDSGSSSLLQ GRNIQAMERN 480 NQTGPPPSIF GGSGGGSNMT TLDFMGIGGS RQQAASLQEQ QQQRLELEAM SQQRVLPMIN 540 PFHQQLSHGD SAIEKPIWDV

Sequence ? help Back to Top

Protein Sequence Length: 560 aa Download sequence

MSNISGDDGS FSSGNTGEEV QQLDQKQQKQ LLLQASSASG PSAASNSNGS SSQHPQQPAH  60
ACQDPNAEVI ALSPTTLMAT NRFVCEICNK GFQRDQNLQL HRRGHNLPWK LRQRTTTEVR  120
KRVYICPEPT CVHHNPARAL GDLTGIKKHF SRKHGEKKWK CDKCSKKYAV QSDWKAHQKT  180
CGTREYKCDC GTIFSRRDSF ITHRAFCDAL AEENNKVNQG LINNMGSNLQ NQMPDLMSSM  240
PMSNAINTSM GISDFNNFDP KNPLKSLPQE LVPIPFKSMN MGGGGMFSSS SGTLFGAPRN  300
VSTASSSLQL SSNSSSGFNY LQDGKNGTCQ IAGSPQMSAT ALLQKAAQMG ATASNSINSP  360
MMQKSFASSM AGPNFAGIHQ QQNTNSYDHF QSQTDQSSMV GISEGGFSNP LMPKSPNEMA  420
QLFNAATGSS SAMNDMGIFT NMFMNGVDNR NQGLMKNMEH EDSGSSSLLQ GRNIQAMERN  480
NQTGPPPSIF GGSGGGSNMT TLDFMGIGGS RQQAASLQEQ QQQRLELEAM SQQRVLPMIN  540
PFHQQLSHGD SAIEKPIWDV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44160.1	8e-92	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OMO63760