PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMO63753 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
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Family | C3H | ||||||||
Protein Properties | Length: 478aa MW: 51319.6 Da PI: 8.9179 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 35.4 | 1.8e-11 | 49 | 75 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++ + C +++rtG+C yG+rC+++H++ OMO63753 49 PGVPDCVYYMRTGFCGYGNRCRYNHPR 75 57899********************96 PP | |||||||
2 | zf-CCCH | 40.1 | 6e-13 | 94 | 120 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+f+++tGtCk+G++CkF+H++ OMO63753 94 PGEPACQFYLKTGTCKFGASCKFHHPK 120 57899********************96 PP | |||||||
3 | zf-CCCH | 36.6 | 7.5e-12 | 141 | 166 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tG+Ck+G +CkF+H++ OMO63753 141 GEKECSYYLKTGQCKFGITCKFHHPQ 166 7899********************97 PP | |||||||
4 | zf-CCCH | 36.5 | 8.3e-12 | 297 | 323 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++++rtG Ck+G++C+++H++ OMO63753 297 PGEPECQYYLRTGDCKFGSSCRYHHPR 323 5799*********************96 PP | |||||||
5 | zf-CCCH | 36.3 | 9.4e-12 | 344 | 369 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 + +C+f++++G+Ck+G++CkF H++ OMO63753 344 GVQPCSFYLQNGHCKFGSTCKFDHPM 369 6789********************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 478 aa Download sequence |
MELYGRNPAR NGSQSGHQPE WSPAGPETGL EESMWQLSLR GSESYPERPG VPDCVYYMRT 60 GFCGYGNRCR YNHPRNRAAV EAAVRATGEY PERPGEPACQ FYLKTGTCKF GASCKFHHPK 120 HAGGSFSQVP LNIYGYPLRP GEKECSYYLK TGQCKFGITC KFHHPQPAGT SMPASAPQFY 180 QPVQSPSVPV PEQYGGASTN VRVARPPLVP GSYVQGAYGP VLFSPGVVPI PGWSHYSAPV 240 SPVLSPGAQP AVGATSLYGL TQLSSSTPSL AGPYPSLPSS TGPSSSNQKE QTFPERPGEP 300 ECQYYLRTGD CKFGSSCRYH HPRDRVVPRT NCVLSPMGLP LRPGVQPCSF YLQNGHCKFG 360 STCKFDHPMG TTTMRYSPSA SSLIDMPVAP YPVGSLLATL APSSSSSDLR PELISGSKKD 420 SYLTRIPSSA STSSSSVGLI FSQTGSVPLS DLQLSSQSSV PLSSSRSTRQ GGEVRRST |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.1 | 0.0 | C3H family protein |
Link Out ? help Back to Top | |
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Ensembl | OMO63753 |