PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO63753
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family C3H
Protein Properties Length: 478aa    MW: 51319.6 Da    PI: 8.9179
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO63753genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.41.8e-114975127
              --S---SGGGGTS--TTTTT-SS-SSS CS
   zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
              ++ + C +++rtG+C yG+rC+++H++
  OMO63753 49 PGVPDCVYYMRTGFCGYGNRCRYNHPR 75
              57899********************96 PP

2zf-CCCH40.16e-1394120127
               --S---SGGGGTS--TTTTT-SS-SSS CS
   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
               ++++ C+f+++tGtCk+G++CkF+H++
  OMO63753  94 PGEPACQFYLKTGTCKFGASCKFHHPK 120
               57899********************96 PP

3zf-CCCH36.67.5e-12141166227
               -S---SGGGGTS--TTTTT-SS-SSS CS
   zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
               ++++C+++++tG+Ck+G +CkF+H++
  OMO63753 141 GEKECSYYLKTGQCKFGITCKFHHPQ 166
               7899********************97 PP

4zf-CCCH36.58.3e-12297323127
               --S---SGGGGTS--TTTTT-SS-SSS CS
   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
               +++++C++++rtG Ck+G++C+++H++
  OMO63753 297 PGEPECQYYLRTGDCKFGSSCRYHHPR 323
               5799*********************96 PP

5zf-CCCH36.39.4e-12344369227
               -S---SGGGGTS--TTTTT-SS-SSS CS
   zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
               +  +C+f++++G+Ck+G++CkF H++
  OMO63753 344 GVQPCSFYLQNGHCKFGSTCKFDHPM 369
               6789********************95 PP

Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    
MELYGRNPAR NGSQSGHQPE WSPAGPETGL EESMWQLSLR GSESYPERPG VPDCVYYMRT  60
GFCGYGNRCR YNHPRNRAAV EAAVRATGEY PERPGEPACQ FYLKTGTCKF GASCKFHHPK  120
HAGGSFSQVP LNIYGYPLRP GEKECSYYLK TGQCKFGITC KFHHPQPAGT SMPASAPQFY  180
QPVQSPSVPV PEQYGGASTN VRVARPPLVP GSYVQGAYGP VLFSPGVVPI PGWSHYSAPV  240
SPVLSPGAQP AVGATSLYGL TQLSSSTPSL AGPYPSLPSS TGPSSSNQKE QTFPERPGEP  300
ECQYYLRTGD CKFGSSCRYH HPRDRVVPRT NCVLSPMGLP LRPGVQPCSF YLQNGHCKFG  360
STCKFDHPMG TTTMRYSPSA SSLIDMPVAP YPVGSLLATL APSSSSSDLR PELISGSKKD  420
SYLTRIPSSA STSSSSVGLI FSQTGSVPLS DLQLSSQSSV PLSSSRSTRQ GGEVRRST
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.10.0C3H family protein