PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO63055

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

SBP

Protein Properties

Length: 421aa MW: 44438.9 Da PI: 8.8651

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO63055	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	70.8	2.6e-22	83	129	1	47
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTS CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCs 47 +CqvegC++dls+ak y++rhkvC++hsk+++v+v+g++qrfCqqCs OMO63055 83 RCQVEGCSVDLSDAKAYYSRHKVCNMHSKSSTVIVAGIQQRFCQQCS 129 6*********************************************9 PP
2	SBP	48.9	1.7e-15	163	191	48	76
SEEETTT--SS--S-STTTT-------S- CS SBP 48 rfhelsefDeekrsCrrrLakhnerrrkk 76 rfh+lsefD++krsCrrrLa+hnerrrk+ OMO63055 163 RFHQLSEFDQGKRSCRRRLAGHNERRRKP 191 9**************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 421 aa Download sequence
MEMGSGSLTE SGGSSTNSST ESLNGLKFGK KIYFEDAAAA VASGGGGATV GTPVKSGPGS 60 SSSSGSGRKA RGGGAVQSAQ PPRCQVEGCS VDLSDAKAYY SRHKVCNMHS KSSTVIVAGI 120 QQRFCQQCSS GKGCGNYSYE LVSGVVCRLL VVLDFDGGFG FIRFHQLSEF DQGKRSCRRR 180 LAGHNERRRK PPPGSLLPSR YGRLSPSIIA FDACDTESSS RGGSFIMDFS AYPRLSARDA 240 WPTARSSSKR VPGNQNTTTA RSLPHPWQNN PENPPADLFL QSSPGGTGFS SAEIPPGECF 300 TGVADSNCAL SLLSNQPWGS RNRASSLGVN DMLNTEGSSV AQPTTPHGAA VNPYSNSSWG 360 FKGNDSGSSS HGMTSSVGSQ PVNSQLSGGI DLSQQNRRQQ YMELEQSRAY DTSTQHIHWS 420 L

Sequence ? help Back to Top

Protein Sequence Length: 421 aa Download sequence

MEMGSGSLTE SGGSSTNSST ESLNGLKFGK KIYFEDAAAA VASGGGGATV GTPVKSGPGS  60
SSSSGSGRKA RGGGAVQSAQ PPRCQVEGCS VDLSDAKAYY SRHKVCNMHS KSSTVIVAGI  120
QQRFCQQCSS GKGCGNYSYE LVSGVVCRLL VVLDFDGGFG FIRFHQLSEF DQGKRSCRRR  180
LAGHNERRRK PPPGSLLPSR YGRLSPSIIA FDACDTESSS RGGSFIMDFS AYPRLSARDA  240
WPTARSSSKR VPGNQNTTTA RSLPHPWQNN PENPPADLFL QSSPGGTGFS SAEIPPGECF  300
TGVADSNCAL SLLSNQPWGS RNRASSLGVN DMLNTEGSSV AQPTTPHGAA VNPYSNSSWG  360
FKGNDSGSSS HGMTSSVGSQ PVNSQLSGGI DLSQQNRRQQ YMELEQSRAY DTSTQHIHWS  420
L

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42200.1	3e-62	SBP family protein

Link Out ? help Back to Top
Ensembl	OMO63055