PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO63050
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family C3H
Protein Properties Length: 297aa    MW: 30980.2 Da    PI: 9.8572
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO63050genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.51.7e-063558225
              -S---SGGGGTS--TTTTT-SS-S CS
   zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
              k ++C  f+ t  C++G++C+F H
  OMO63050 35 KSKPCTKFFSTAGCPFGESCHFLH 58
              7789******************** PP
2zf-CCCH27.17.5e-0999123226
               -S---SGGGGTS--TTTTT-SS-SS CS
   zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
               kt+lC+ f+    Ck+Gd+C+FaHg
  OMO63050  99 KTRLCNKFSSAEGCKFGDKCHFAHG 123
               8***********************9 PP
3zf-CCCH35.22.1e-11264288126
               --S---SGGGGTS--TTTTT-SS-SS CS
   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
               ykt+lC++f + G C +G+rC+FaHg
  OMO63050 264 YKTKLCDNFTK-GSCTFGERCHFAHG 288
               9**********.*************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    
MDNRKRGRGE AGFNVNGGGF KKTKPEMEST GVGSKSKPCT KFFSTAGCPF GESCHFLHYV  60
PGGYNAVAQM MNLAPIVPPA SRNVAAAPPI PNGSGSAVKT RLCNKFSSAE GCKFGDKCHF  120
AHGDWELGKP IAPSHDDPRA MAPIPGRMGS RMEPPPPSGP AASFGASATA KISVDASLAG  180
AIIGKGGVHS KQICRRTGAK LSIREHESDP TLKNIELEGS FEQIKQASAM VRELISSLGP  240
VPGPAKTPGG HGGHGGQGHP GSNYKTKLCD NFTKGSCTFG ERCHFAHGAA ELRKTVM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.12e-55C3H family protein