PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMO62974 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 363aa MW: 39837.6 Da PI: 8.5876 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 54.9 | 1.5e-17 | 180 | 234 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Lee F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k OMO62974 180 RKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 234 778899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 127.8 | 4.7e-41 | 180 | 270 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+rlskeq+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk OMO62974 180 RKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELR-ALK 270 69*************************************************************************************9.555 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 363 aa Download sequence |
MELALSLGDP SKPFSFLDKT PKLTSKDLGF CMGLGNGFRS QEKGKDGFEV ESKAGGGDQQ 60 QQQGFKDGDD QKRVSSDPPL QLDLLPFSPV PRTQPPQLRF PWLTDNQGPA GRGLDVNRLP 120 VVAVADEAEE GAALSSPNSA VSSFQMDFGI RSSRGKRDLE LEHERASSRA SDDDENGSTR 180 KKLRLSKEQS AFLEESFKEH NTLNPKQKLA LAKQLNLRPR QVEVWFQNRR ARTKLKQTEV 240 DCEYLKRCCE TLTEENRRLQ KELQELRALK TSQPFYMQLP ATTLTMCPSC ERVATTSTTA 300 PPAAAATTNN ATAAASGGSN TDAKSGVLAL TKTRGGYPFS PLQTHVTQSQ PPQSQPQAHQ 360 ATS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 179 | 185 | TRKKLRL |
2 | 229 | 237 | RRARTKLKQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06710.1 | 6e-83 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Ensembl | OMO62974 |