PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO62974
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family HD-ZIP
Protein Properties Length: 363aa    MW: 39837.6 Da    PI: 8.5876
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO62974genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.91.5e-17180234256
               T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
  Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
               rk+ +++keq   Lee F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  OMO62974 180 RKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 234
               778899***********************************************98 PP

2HD-ZIP_I/II127.84.7e-41180270192
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                  +kk+rlskeq+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk
     OMO62974 180 RKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELR-ALK 270
                  69*************************************************************************************9.555 PP

Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    
MELALSLGDP SKPFSFLDKT PKLTSKDLGF CMGLGNGFRS QEKGKDGFEV ESKAGGGDQQ  60
QQQGFKDGDD QKRVSSDPPL QLDLLPFSPV PRTQPPQLRF PWLTDNQGPA GRGLDVNRLP  120
VVAVADEAEE GAALSSPNSA VSSFQMDFGI RSSRGKRDLE LEHERASSRA SDDDENGSTR  180
KKLRLSKEQS AFLEESFKEH NTLNPKQKLA LAKQLNLRPR QVEVWFQNRR ARTKLKQTEV  240
DCEYLKRCCE TLTEENRRLQ KELQELRALK TSQPFYMQLP ATTLTMCPSC ERVATTSTTA  300
PPAAAATTNN ATAAASGGSN TDAKSGVLAL TKTRGGYPFS PLQTHVTQSQ PPQSQPQAHQ  360
ATS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1179185TRKKLRL
2229237RRARTKLKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.16e-83HD-ZIP family protein