PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO62784
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family C3H
Protein Properties Length: 406aa    MW: 45312.7 Da    PI: 8.1187
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO62784genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.33.4e-10134156426
               ---SGGGGTS--TTTTT-SS-SS CS
   zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                 C++f+r+G C++Gd C FaHg
  OMO62784 134 TVCSDFRRGGGCPRGDDCDFAHG 156
               68********************9 PP

Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    
MSSACAEQHH HKFLPCHQLP KKASNFKDIE IPPRKLLLSH HNNHIQENAA AAMQIPYEST  60
SLHKYLPSNR NNGEDIDDDD NDSDPYATDH FRMYEFKVRK CTRSRSHDWT DCPFAHPGEK  120
ARRRDPRRYR YSSTVCSDFR RGGGCPRGDD CDFAHGVFEC WLHPTRYRTE ACKDGKNCKR  180
KVCFFAHSPR ELRLLPEASP KYKNSSASDC NSSSSSSPIN KNSFCCLFCH SVTNSPTSTL  240
LGLSHLSRSP SLSPPLSPVK QQRATSLNGF SPISRYGGDR LTKFGTQVMS YKEVLNELIM  300
NSLEKMKICE VSSPMAAAPA GNNNNLMKNA NNNIPWLDVS MNGEFDHQQP QFVLSPSRPS  360
PSSSGGSGEY FGVTSPGLFG GGEKLNGNVI NCDPDPDLGW VNELLM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03790.14e-48C3H family protein