PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMO62784 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
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Family | C3H | ||||||||
Protein Properties | Length: 406aa MW: 45312.7 Da PI: 8.1187 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 31.3 | 3.4e-10 | 134 | 156 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 C++f+r+G C++Gd C FaHg OMO62784 134 TVCSDFRRGGGCPRGDDCDFAHG 156 68********************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 406 aa Download sequence |
MSSACAEQHH HKFLPCHQLP KKASNFKDIE IPPRKLLLSH HNNHIQENAA AAMQIPYEST 60 SLHKYLPSNR NNGEDIDDDD NDSDPYATDH FRMYEFKVRK CTRSRSHDWT DCPFAHPGEK 120 ARRRDPRRYR YSSTVCSDFR RGGGCPRGDD CDFAHGVFEC WLHPTRYRTE ACKDGKNCKR 180 KVCFFAHSPR ELRLLPEASP KYKNSSASDC NSSSSSSPIN KNSFCCLFCH SVTNSPTSTL 240 LGLSHLSRSP SLSPPLSPVK QQRATSLNGF SPISRYGGDR LTKFGTQVMS YKEVLNELIM 300 NSLEKMKICE VSSPMAAAPA GNNNNLMKNA NNNIPWLDVS MNGEFDHQQP QFVLSPSRPS 360 PSSSGGSGEY FGVTSPGLFG GGEKLNGNVI NCDPDPDLGW VNELLM |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G03790.1 | 4e-48 | C3H family protein |
Link Out ? help Back to Top | |
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Ensembl | OMO62784 |