PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO62679

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

AP2

Protein Properties

Length: 758aa MW: 82164.6 Da PI: 6.5095

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO62679	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	35	3.7e-11	313	369	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + ++ k + g ++ +e+Aa+a++ a++k++g OMO62679 313 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 369 57*****************4444.2455535555.779999************98 PP
2	AP2	46.5	8.8e-15	412	463	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g OMO62679 412 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 463 57**************988532...5**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 758 aa Download sequence
MASMNNWLAF SLSPQQLPSQ SQPSSVDHHH QDHQNGAVSR LGFNSNELSG ECFDLTSADS 60 SLPSLNLPPP FGILEAFNRN NQSQDWNMKG LGMNSDGNYK TSSELSMLMG SSCNSSNTQN 120 NQQQQQPKLE NLLGNHSFSN SNNKVVHTLY PGPGPGPGEY MFPNSSNLQL PSHPEDSTSN 180 EGDDNNNNIN TGNGSTSSIG LSMIKTWLRN QPAPTTTTTT AAAAAQPAEP KNNGGGGSQS 240 LSLSMSTGSQ TGPPLPLLTT STGGGGGSGG ETSSSDNNKQ QQNTLSGLDT QSGANAIEAV 300 PRKSIDTFGQ RTSIYRGVTR HRWTGRYEAH LWDNSCRREG QTRKGRQGGY DKEEKAARAY 360 DLAALKYWGT TTTTNFPISN YEKELEEMKH MTRQEYVASL RRKSSGFSRG ASIYRGVTRH 420 HQHGRWQARI GRVAGNKDLY LGTFSTQEEA AEAYDIAAIK FRGLNAVTNF DMSRYDVKSI 480 LESSTLPIGG AAKRLKEVEQ AEMAIDGGGA RADDEEMSDH GININYHGHG WPTIAFQQQP 540 FNQYPNYGQG QRVWCKQEQE QDFRQDLHNL QLGGSTHQYN FFQPTSVLHN LMAMDSVSSS 600 MEHSSASNSV NIYSNANNQG GVPVPVPVPV PVGYGIGNNN INGGYNVNVI PLISTVVASD 660 NSNQNQGSNN CFGDNDIKAI GNYENMYGSA HDPNYLSRNS YYVSQGGGGG VKASNNTYDQ 720 PSPCINNWVP TAVPTIAQRS SNMGVCHGAP TFTVWSDT

Sequence ? help Back to Top

Protein Sequence Length: 758 aa Download sequence

MASMNNWLAF SLSPQQLPSQ SQPSSVDHHH QDHQNGAVSR LGFNSNELSG ECFDLTSADS  60
SLPSLNLPPP FGILEAFNRN NQSQDWNMKG LGMNSDGNYK TSSELSMLMG SSCNSSNTQN  120
NQQQQQPKLE NLLGNHSFSN SNNKVVHTLY PGPGPGPGEY MFPNSSNLQL PSHPEDSTSN  180
EGDDNNNNIN TGNGSTSSIG LSMIKTWLRN QPAPTTTTTT AAAAAQPAEP KNNGGGGSQS  240
LSLSMSTGSQ TGPPLPLLTT STGGGGGSGG ETSSSDNNKQ QQNTLSGLDT QSGANAIEAV  300
PRKSIDTFGQ RTSIYRGVTR HRWTGRYEAH LWDNSCRREG QTRKGRQGGY DKEEKAARAY  360
DLAALKYWGT TTTTNFPISN YEKELEEMKH MTRQEYVASL RRKSSGFSRG ASIYRGVTRH  420
HQHGRWQARI GRVAGNKDLY LGTFSTQEEA AEAYDIAAIK FRGLNAVTNF DMSRYDVKSI  480
LESSTLPIGG AAKRLKEVEQ AEMAIDGGGA RADDEEMSDH GININYHGHG WPTIAFQQQP  540
FNQYPNYGQG QRVWCKQEQE QDFRQDLHNL QLGGSTHQYN FFQPTSVLHN LMAMDSVSSS  600
MEHSSASNSV NIYSNANNQG GVPVPVPVPV PVGYGIGNNN INGGYNVNVI PLISTVVASD  660
NSNQNQGSNN CFGDNDIKAI GNYENMYGSA HDPNYLSRNS YYVSQGGGGG VKASNNTYDQ  720
PSPCINNWVP TAVPTIAQRS SNMGVCHGAP TFTVWSDT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17430.1	1e-124	AP2 family protein

Link Out ? help Back to Top
Ensembl	OMO62679