PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO62427

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

Dof

Protein Properties

Length: 602aa MW: 68980 Da PI: 4.5463

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO62427	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	117.5	5.4e-37	24	81	4	61
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +kcprC+s ntkfCyynnyslsqPr+fCk+CrryWt+GG+lrnvPvGgg+rk+++ OMO62427 24 PPQKCPRCESFNTKFCYYNNYSLSQPRFFCKTCRRYWTEGGSLRNVPVGGGCRKSNRI 81 5789**************************************************9875 PP

Sequence ? help Back to Top
Protein Sequence Length: 602 aa Download sequence
MKKQQDQRLK PAAAENLRPE EQHPPQKCPR CESFNTKFCY YNNYSLSQPR FFCKTCRRYW 60 TEGGSLRNVP VGGGCRKSNR IANSKASSSG ENSRPLIPPS NPMISSTSAS SLSDIPSMGS 120 YFYPRGGFLS PFGSSNLGLL QGFVGFPSFG FPEAKDLEIL SLRRSDIEML PVDIGQLVTL 180 RSDTSINHLH PGIKMLLERT EDLYLRGLEG DDNAAERNEE DQCSLLFGAK MVFSSLTRLF 240 IDGRDNLKYL LSASMARSLV QLNHFEVLYC ERLIEIIHTE GDVEEVTKDG MMIQIFPKLE 300 YLRLQYLRKL ERFCSGSHLE LSSLKNLEIR SCPSFITFVS DSIMKNETHR YHTGEEAEEN 360 KSEIDFSFLF NEKVAVPSLV VLALFEGNCS KWKKIWHPKL TPNSFAKLKF LILDQCDGLS 420 SIFPFIMVDM IQKLEYMEIT HCDNLESIIE PSKLPFTESS FKFVFPKVSC LKLESLSELQ 480 SFYPSMHTTE WPALKELVVT GCNNVKLFAP KNLDSQPDIL PDEQPLFWFS KEAFPCLKKL 540 RTEDEEEEKE DDDDGDDDDE DDYDDDDDDD DYDDREAFPC LKKLRTDQDA KEILVEEEEE 600 EK

Sequence ? help Back to Top

Protein Sequence Length: 602 aa Download sequence

MKKQQDQRLK PAAAENLRPE EQHPPQKCPR CESFNTKFCY YNNYSLSQPR FFCKTCRRYW  60
TEGGSLRNVP VGGGCRKSNR IANSKASSSG ENSRPLIPPS NPMISSTSAS SLSDIPSMGS  120
YFYPRGGFLS PFGSSNLGLL QGFVGFPSFG FPEAKDLEIL SLRRSDIEML PVDIGQLVTL  180
RSDTSINHLH PGIKMLLERT EDLYLRGLEG DDNAAERNEE DQCSLLFGAK MVFSSLTRLF  240
IDGRDNLKYL LSASMARSLV QLNHFEVLYC ERLIEIIHTE GDVEEVTKDG MMIQIFPKLE  300
YLRLQYLRKL ERFCSGSHLE LSSLKNLEIR SCPSFITFVS DSIMKNETHR YHTGEEAEEN  360
KSEIDFSFLF NEKVAVPSLV VLALFEGNCS KWKKIWHPKL TPNSFAKLKF LILDQCDGLS  420
SIFPFIMVDM IQKLEYMEIT HCDNLESIIE PSKLPFTESS FKFVFPKVSC LKLESLSELQ  480
SFYPSMHTTE WPALKELVVT GCNNVKLFAP KNLDSQPDIL PDEQPLFWFS KEAFPCLKKL  540
RTEDEEEEKE DDDDGDDDDE DDYDDDDDDD DYDDREAFPC LKKLRTDQDA KEILVEEEEE  600
EK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60200.1	3e-31	Dof family protein

Link Out ? help Back to Top
Ensembl	OMO62427