PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OMO62333 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
|
||||||||
Family | GATA | ||||||||
Protein Properties | Length: 307aa MW: 34215.6 Da PI: 8.478 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 54.2 | 2e-17 | 234 | 268 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 Cs+C + Tp+WR gp g+ktLCnaCG++y++ +l OMO62333 234 CSHCLAQRTPQWRAGPLGPKTLCNACGVRYKSGRL 268 *******************************9986 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 307 aa Download sequence |
MDFCRNVSVS GEYQQEQVLS SPCSKLSTLD DLFPAQNTEV DVSMEWLSIF VEDCFSSTGN 60 CIPVTAEATK TTTTTTNGQN KNKSTDETTK QAVSAAAKSL LQKPQQNDTL ASLQKFVVPG 120 KARSKRKRTT ATLLSKTKSN PFSSWSKNLN PHNPNFQLAS SDPPLLHQTY WLADSELMVP 180 KKEEDNNSGI SNIMGSSNSE EEESKKEEEI MVEGKMMMMN KESLGQQQQQ PRRCSHCLAQ 240 RTPQWRAGPL GPKTLCNACG VRYKSGRLLP EYRPAKSPTF VSYLHSNSHK KVMEMRMSCL 300 SSIPSEQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G32890.1 | 3e-35 | GATA family protein |
Link Out ? help Back to Top | |
---|---|
Ensembl | OMO62333 |