PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO62029
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family GRAS
Protein Properties Length: 667aa    MW: 75413.2 Da    PI: 6.1298
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO62029genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS383.62.3e-1172946633374
      GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIl 103
               +lL++cA+av+ +d++ a++lL+++ +++s  gd +qRla+yf++AL++rla+++   y  + +++ts    +++l+a+++++ ++P+ k+s++ aN+ I+
  OMO62029 294 SLLTQCAQAVTINDQRTANELLKQITQHSSDCGDGTQRLAHYFANALKTRLAGMGAPSYLPMLSNRTS---AADVLKAYQVYVLACPFKKMSNFYANKKIM 391
               79***************************************************988888666555555...8***************************** PP

      GRAS 104 eavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEal 202
                 +e+++++Hi+Df+i +G+QWp+L+q L++R++gpp+lRiTg++ p++g   +e++eetg+rL++++e+++vpfe+nv +ak++e+++leeL++ ++E++
  OMO62029 392 GVAEKATTLHIVDFGICYGFQWPCLIQRLSARANGPPKLRITGIEFPQPGfrPEERVEETGRRLKRYCERFNVPFEYNV-IAKKWETIKLEELKITKDEVV 491
               *************************************************9****************************9.7******************** PP

      GRAS 203 aVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacega 303
               +Vn++++l++l+d++++ +s+rd+vLkl++s++P + ++   +  +n++ F++rf eal ++sa fd ++a+++r+++ r++ E+e++gr+i+nvvaceg+
  OMO62029 492 VVNCMYRLKNLPDDTMAPNSARDTVLKLIRSMNPALYIHGVANGTYNAPFFVTRFREALFHFSAQFDVFDATVSRDNQPRMMFEKEVIGRDIMNVVACEGT 592
               ***************************************************************************************************** PP

      GRAS 304 errerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
               er+er et+++W++r  +aGFk+vpl+++ +k++  +++  +   + v+ +  ++++gWk+r ++++S+W+
  OMO62029 593 ERVERPETYKQWQARTLRAGFKQVPLDQELMKKVTNMVQSNYHSDFVVDVDGRWMLQGWKGRVIYALSCWK 663
               ******************************************777*************************8 PP

Sequence ? help Back to Top
Protein Sequence    Length: 667 aa     Download sequence    
MNTLFQDFPS SMYGLKFDHG SVPVYSNYNL DNGFLEQVVP IPSPPSLATS PDSDSPVASA  60
SSASSSSGSG MSSSDSHPLD NVPFANEMLN YINEMLMEED MEEKTCMLQD CLALQAAEKS  120
LYEALGHEYP FSIDPSSPCI GQNYPSPDEN LTQITNLVNP GEFKLSHIQT SLIDSLETTS  180
LIPDLQKQTT KEPFRNFNGP DDGRYQSASS RGRKNYERDE DGDYLEEGRR NKQSALSLEE  240
SQEQSDMFDD VLLCKGENED SPNCSLHKST HLKGSSPTRR KKNGKKSEVV DLWSLLTQCA  300
QAVTINDQRT ANELLKQITQ HSSDCGDGTQ RLAHYFANAL KTRLAGMGAP SYLPMLSNRT  360
SAADVLKAYQ VYVLACPFKK MSNFYANKKI MGVAEKATTL HIVDFGICYG FQWPCLIQRL  420
SARANGPPKL RITGIEFPQP GFRPEERVEE TGRRLKRYCE RFNVPFEYNV IAKKWETIKL  480
EELKITKDEV VVVNCMYRLK NLPDDTMAPN SARDTVLKLI RSMNPALYIH GVANGTYNAP  540
FFVTRFREAL FHFSAQFDVF DATVSRDNQP RMMFEKEVIG RDIMNVVACE GTERVERPET  600
YKQWQARTLR AGFKQVPLDQ ELMKKVTNMV QSNYHSDFVV DVDGRWMLQG WKGRVIYALS  660
CWKPVRN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-180GRAS family protein