PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OMO62029 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
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Family | GRAS | ||||||||
Protein Properties | Length: 667aa MW: 75413.2 Da PI: 6.1298 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 383.6 | 2.3e-117 | 294 | 663 | 3 | 374 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIl 103 +lL++cA+av+ +d++ a++lL+++ +++s gd +qRla+yf++AL++rla+++ y + +++ts +++l+a+++++ ++P+ k+s++ aN+ I+ OMO62029 294 SLLTQCAQAVTINDQRTANELLKQITQHSSDCGDGTQRLAHYFANALKTRLAGMGAPSYLPMLSNRTS---AADVLKAYQVYVLACPFKKMSNFYANKKIM 391 79***************************************************988888666555555...8***************************** PP GRAS 104 eavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEal 202 +e+++++Hi+Df+i +G+QWp+L+q L++R++gpp+lRiTg++ p++g +e++eetg+rL++++e+++vpfe+nv +ak++e+++leeL++ ++E++ OMO62029 392 GVAEKATTLHIVDFGICYGFQWPCLIQRLSARANGPPKLRITGIEFPQPGfrPEERVEETGRRLKRYCERFNVPFEYNV-IAKKWETIKLEELKITKDEVV 491 *************************************************9****************************9.7******************** PP GRAS 203 aVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacega 303 +Vn++++l++l+d++++ +s+rd+vLkl++s++P + ++ + +n++ F++rf eal ++sa fd ++a+++r+++ r++ E+e++gr+i+nvvaceg+ OMO62029 492 VVNCMYRLKNLPDDTMAPNSARDTVLKLIRSMNPALYIHGVANGTYNAPFFVTRFREALFHFSAQFDVFDATVSRDNQPRMMFEKEVIGRDIMNVVACEGT 592 ***************************************************************************************************** PP GRAS 304 errerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 er+er et+++W++r +aGFk+vpl+++ +k++ +++ + + v+ + ++++gWk+r ++++S+W+ OMO62029 593 ERVERPETYKQWQARTLRAGFKQVPLDQELMKKVTNMVQSNYHSDFVVDVDGRWMLQGWKGRVIYALSCWK 663 ******************************************777*************************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 667 aa Download sequence |
MNTLFQDFPS SMYGLKFDHG SVPVYSNYNL DNGFLEQVVP IPSPPSLATS PDSDSPVASA 60 SSASSSSGSG MSSSDSHPLD NVPFANEMLN YINEMLMEED MEEKTCMLQD CLALQAAEKS 120 LYEALGHEYP FSIDPSSPCI GQNYPSPDEN LTQITNLVNP GEFKLSHIQT SLIDSLETTS 180 LIPDLQKQTT KEPFRNFNGP DDGRYQSASS RGRKNYERDE DGDYLEEGRR NKQSALSLEE 240 SQEQSDMFDD VLLCKGENED SPNCSLHKST HLKGSSPTRR KKNGKKSEVV DLWSLLTQCA 300 QAVTINDQRT ANELLKQITQ HSSDCGDGTQ RLAHYFANAL KTRLAGMGAP SYLPMLSNRT 360 SAADVLKAYQ VYVLACPFKK MSNFYANKKI MGVAEKATTL HIVDFGICYG FQWPCLIQRL 420 SARANGPPKL RITGIEFPQP GFRPEERVEE TGRRLKRYCE RFNVPFEYNV IAKKWETIKL 480 EELKITKDEV VVVNCMYRLK NLPDDTMAPN SARDTVLKLI RSMNPALYIH GVANGTYNAP 540 FFVTRFREAL FHFSAQFDVF DATVSRDNQP RMMFEKEVIG RDIMNVVACE GTERVERPET 600 YKQWQARTLR AGFKQVPLDQ ELMKKVTNMV QSNYHSDFVV DVDGRWMLQG WKGRVIYALS 660 CWKPVRN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 1e-180 | GRAS family protein |
Link Out ? help Back to Top | |
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Ensembl | OMO62029 |