PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO61946
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family Trihelix
Protein Properties Length: 307aa    MW: 35119.4 Da    PI: 6.1236
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO61946genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix40.66.7e-1325103179
  trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstc 79 
               +W +q+vl L++    +e + +++ +  ++W+ + +++ + g+  s++qC+ kw+ l ++y kik++e++ +s+  s +
  OMO61946  25 QWGEQQVLILVNEIAAIEADCSNALSSFQKWKIIVQNCNALGVPHSSIQCRRKWNLLLQEYNKIKRWESQSQSQCDSYW 103
               7********************************************************************9755555455 PP
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    
MGNEDEKTSR PSAATRRTRS QASTQWGEQQ VLILVNEIAA IEADCSNALS SFQKWKIIVQ  60
NCNALGVPHS SIQCRRKWNL LLQEYNKIKR WESQSQSQCD SYWSLGVERR NEFALPQHFD  120
KDLFDAIRNV VELLDDKSGT DRDSDPEAQD DPIPLTHQMI THPHPGPRKQ SRNLKPLRSN  180
AEAKSSKRCG VEKAKKIHVV QVEVEQPHES RVVEKIRTSK AEEENLGKRE VEMKPMFNIE  240
EEQQIMVARL SENAEQIHAI VEEIVTDNNA DQRAAGLNNI DEFRTDFIRR QGDKLITCLG  300
DILSTLN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31270.12e-61Trihelix family protein