PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO61609

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

TALE

Protein Properties

Length: 431aa MW: 47907.1 Da PI: 6.357

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO61609	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	23.4	1e-07	378	411	21	54
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp++e++++L +++gL+ +q+ +WF N+R + OMO61609 378 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 411 469*****************************87 PP
2	ELK	28.8	2.8e-10	332	353	1	22
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELKh+L+++Y+++++++++E++ OMO61609 332 ELKHELKQGYKEKIVDIREEIL 353 9*******************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 431 aa Download sequence
MAFHHNHLSQ DLPLHHFTDQ QQQQTNQHQQ TQQLPETTAP NWLNTALLRS QQPQPPQPHA 60 AHFSDPNFLN LHTTTTASDS TAASHAPNQW LSRSSSSLLH RNHSDVIDDV AAAAAAAAAG 120 GESMIGVESG DLKNSNSETM NNNNKSEGVV VESGDGGAVN WQNARHKAEI LAHPLYEQLL 180 SAHVACLRIA TPVDQLPRID AQLAQSQHVV AKYSTLGGGT QGLVGDDKEL DQFMTHYVLL 240 LCSFKEQLQQ HVRVHAMEAV MACWEIEQSL QSLTGVSPGE GTGATMSDDD DDQVDSDANL 300 FDGGLEGADT MGFGPLVPTE SERSLMERVR QELKHELKQG YKEKIVDIRE EILRKRRAGK 360 LPGDTTSVLK AWWQSHSKWP YPTEEDKARL VQETGLQLKQ INNWFINQRK RNWHSNPSTS 420 TVLKSKRKRY A

Sequence ? help Back to Top

Protein Sequence Length: 431 aa Download sequence

MAFHHNHLSQ DLPLHHFTDQ QQQQTNQHQQ TQQLPETTAP NWLNTALLRS QQPQPPQPHA  60
AHFSDPNFLN LHTTTTASDS TAASHAPNQW LSRSSSSLLH RNHSDVIDDV AAAAAAAAAG  120
GESMIGVESG DLKNSNSETM NNNNKSEGVV VESGDGGAVN WQNARHKAEI LAHPLYEQLL  180
SAHVACLRIA TPVDQLPRID AQLAQSQHVV AKYSTLGGGT QGLVGDDKEL DQFMTHYVLL  240
LCSFKEQLQQ HVRVHAMEAV MACWEIEQSL QSLTGVSPGE GTGATMSDDD DDQVDSDANL  300
FDGGLEGADT MGFGPLVPTE SERSLMERVR QELKHELKQG YKEKIVDIRE EILRKRRAGK  360
LPGDTTSVLK AWWQSHSKWP YPTEEDKARL VQETGLQLKQ INNWFINQRK RNWHSNPSTS  420
TVLKSKRKRY A

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	409	429	RKRNWHSNPSTSTVLKSKRKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G25220.2	0.0	TALE family protein

Link Out ? help Back to Top
Ensembl	OMO61609