PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO61592

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

ARR-B

Protein Properties

Length: 631aa MW: 69312.2 Da PI: 6.7161

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO61592	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	90.5	1.5e-28	198	251	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ eLH++Fv av+qL G++kA+Pk+ilelm+v+ Lt+e+v+SHLQkYRl OMO61592 198 KPRVVWSVELHRKFVAAVNQL-GIDKAVPKKILELMNVEKLTRENVASHLQKYRL 251 79*****************.******************************8 PP
2	Myb_DNA-binding	39.7	1.2e-12	200	250	1	48
TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 r W+ e++ ++v av+qlG + +k+I + m+ +++t++++ s++qky+ OMO61592 200 RVVWSVELHRKFVAAVNQLGIDkaVPKKILELMNvEKLTRENVASHLQKYR 250 678******************************99***********7 PP
3	Response_reg	76.8	8.1e-26	20	128	1	109
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 vl vdD+p+ + ll+++l++ +y +v+++ ++ al++l+e++ +Dl++ D+ mp+mdG++ll+ e++lp+i+++a+g+++++ + + Ga OMO61592 20 VLAVDDDPTCLLLLETLLRRCQY-HVTTTNQAITALKMLRENKnqFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSANGDPKLVMKGITHGAC 114 799******************.***********888888***************87754.558******************** PP EEEESS--HHHHHH CS Response_reg 96 dflsKpfdpeelvk 109 d+l Kp+ +eel + OMO61592 115 DYLLKPVRIEELQN 128 *********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 631 aa Download sequence
MTVERAISDP RDQFPVGMRV LAVDDDPTCL LLLETLLRRC QYHVTTTNQA ITALKMLREN 60 KNQFDLVISD VHMPDMDGFK LLELVGLEMD LPVIMLSANG DPKLVMKGIT HGACDYLLKP 120 VRIEELQNIW QHVVRRKKFD KKDMNNSGSQ DKAHNDSGEA AGMGNADQNG KLNKKRRDQN 180 EDDDDERDEN DDPSTQKKPR VVWSVELHRK FVAAVNQLGI DKAVPKKILE LMNVEKLTRE 240 NVASHLQKYR LYLKRISCQA NQQANMAAAL GSADPSYLRI ASFNGLGNFH TLAGSDQLQN 300 TAFRSFPPSG VLGRLNTPAG LGLRGLPSAG MIPLSHAQNS GITGHDQSKL QSVVIPGNHN 360 ANILQGMPMS LELDQIQDRK IVTHIGQLPT TDNISAFPVS GSLIDSRITG CSDNNPLLGG 420 TSNSLMLEAS SQKATLHPRN LRDGVSTMSF PNGSTLSDFT SIATTSNQLR ESKSDLRCQA 480 APTSCNAGQI IRSAPQEWNA PRKDAPYNSN VMSCSINSSV SVNGAMVPMA QSLDHNNSIF 540 HRNMDSDAFV PSSFDTLYMK HTEGENSAME PSAIQREGYL LVQPRPQRTY VPDNIGSLED 600 LASAMIKQDQ DKGRVADGDY GCNGYSLRTC I

Sequence ? help Back to Top

Protein Sequence Length: 631 aa Download sequence

MTVERAISDP RDQFPVGMRV LAVDDDPTCL LLLETLLRRC QYHVTTTNQA ITALKMLREN  60
KNQFDLVISD VHMPDMDGFK LLELVGLEMD LPVIMLSANG DPKLVMKGIT HGACDYLLKP  120
VRIEELQNIW QHVVRRKKFD KKDMNNSGSQ DKAHNDSGEA AGMGNADQNG KLNKKRRDQN  180
EDDDDERDEN DDPSTQKKPR VVWSVELHRK FVAAVNQLGI DKAVPKKILE LMNVEKLTRE  240
NVASHLQKYR LYLKRISCQA NQQANMAAAL GSADPSYLRI ASFNGLGNFH TLAGSDQLQN  300
TAFRSFPPSG VLGRLNTPAG LGLRGLPSAG MIPLSHAQNS GITGHDQSKL QSVVIPGNHN  360
ANILQGMPMS LELDQIQDRK IVTHIGQLPT TDNISAFPVS GSLIDSRITG CSDNNPLLGG  420
TSNSLMLEAS SQKATLHPRN LRDGVSTMSF PNGSTLSDFT SIATTSNQLR ESKSDLRCQA  480
APTSCNAGQI IRSAPQEWNA PRKDAPYNSN VMSCSINSSV SVNGAMVPMA QSLDHNNSIF  540
HRNMDSDAFV PSSFDTLYMK HTEGENSAME PSAIQREGYL LVQPRPQRTY VPDNIGSLED  600
LASAMIKQDQ DKGRVADGDY GCNGYSLRTC I

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G25180.1	1e-134	ARR-B family protein

Link Out ? help Back to Top
Ensembl	OMO61592