PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO61497

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

HSF

Protein Properties

Length: 403aa MW: 46148.2 Da PI: 4.9436

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO61497	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	113.4	1.5e-35	14	104	2	101
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl k+ye+++d+ +++++ wse+g sf+v+++ +f++++Lp+yFkh+nf+SFvRQLn+YgF+k++ ++ weF++++F +g+k+ll++i+ OMO61497 14 FLVKTYEMVDDPMTNSMVCWSETGYSFIVWNPPDFSRDLLPRYFKHNNFSSFVRQLNTYGFRKIDPDQ---------WEFANEEFIRGQKHLLKNIH 101 9**************************************************************999.........****************** PP XXX CS HSF_DNA-bind 99 rkk 101 r+k OMO61497 102 RRK 104 *98 PP

Sequence ? help Back to Top
Protein Sequence Length: 403 aa Download sequence
MDGSQGSSNA PPPFLVKTYE MVDDPMTNSM VCWSETGYSF IVWNPPDFSR DLLPRYFKHN 60 NFSSFVRQLN TYGFRKIDPD QWEFANEEFI RGQKHLLKNI HRRKPIHSHS LNHQGNSSVP 120 LTEAEKKEFE EEIKRLSYDK NRLQLQLQKH QKENQEFQFQ IRLLSERFQN MEDRQRQDSK 180 LGAAALPAHI MNLDQVEKLE SSIKCWETLF YGIQESVSEE VYDFGISSSP RPSQIVVTEM 240 QTSSGDYDID GELCSPSSHP CSPYSTDINS SPELHVSVYN AGSPPIPSFH QIVNQKPKSA 300 GIGINSKDSA NLQQPEALQE QVEEKATDLS MSGKVNDGFW AQFLTEVPNP LSDAQEIQQD 360 HPETPSGRIS DSKVPEDRNY WWKTDSVDCL TEHMGHLSQA ERM

Sequence ? help Back to Top

Protein Sequence Length: 403 aa Download sequence

MDGSQGSSNA PPPFLVKTYE MVDDPMTNSM VCWSETGYSF IVWNPPDFSR DLLPRYFKHN  60
NFSSFVRQLN TYGFRKIDPD QWEFANEEFI RGQKHLLKNI HRRKPIHSHS LNHQGNSSVP  120
LTEAEKKEFE EEIKRLSYDK NRLQLQLQKH QKENQEFQFQ IRLLSERFQN MEDRQRQDSK  180
LGAAALPAHI MNLDQVEKLE SSIKCWETLF YGIQESVSEE VYDFGISSSP RPSQIVVTEM  240
QTSSGDYDID GELCSPSSHP CSPYSTDINS SPELHVSVYN AGSPPIPSFH QIVNQKPKSA  300
GIGINSKDSA NLQQPEALQE QVEEKATDLS MSGKVNDGFW AQFLTEVPNP LSDAQEIQQD  360
HPETPSGRIS DSKVPEDRNY WWKTDSVDCL TEHMGHLSQA ERM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45710.1	5e-70	HSF family protein

Link Out ? help Back to Top
Ensembl	OMO61497